BAC Information

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BAC

Clone NameMSMg01-264F09
Chromosome16 (Build37)
Map Location 20,649,172 - 20,649,506
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2
Downstream genePsmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264F09.T7 (MSMg01no264_f09.b1)MSMg01-264F09.TJ (MSMg01no264_f09.g1)
ACCAG405912AG405913
length727825
length of high quality
(start - end)
343 (382 - 724)149 (128 - 276)
definitionCHROMAT_FILE: MSMg01no264_f09.b1 PHD_FILE: MSMg01no264_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:29 2005CHROMAT_FILE: MSMg01no264_f09.g1 PHD_FILE: MSMg01no264_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCTAAGTACTATAAATCTAGCCAACTAAGATTGCCATTAAAGC
TACATAATGAGATTGGGTCACCCGCTATTTTTTGTATGTGATATTTTCCC
AAAAGACAAGTGTTTTGTGGAGATTTTTACTGTTAACTTTAGAAATGACA
GCAGACAATATATTCACTGATAACCAGGTAGGGATTATATTATGACCCTA
CCATTTATAATTTGATCATCCTACACGTTTCACATTTCTGAATATCCTCC
AAGTTGGTATTCCATCTGTAAGGAATACCCTTCAGTTTTCAGTTGGTAAA
TCCTATTTTCTTTTGACCTCCACCCCCCCCTCACCTTCTAGGATACTTTT
CCTTTCTTGCCTCTCAGATTATGTATGACTTTCCTGAGCTCCTGCTATAA
TTGACACACGTATCTCCCGCCTTGTACTTTAAGCTCCAGATGGTCAGGGA
ACTGTATTTGATTAATCTTCATGCCCCTAGAACCAAGTTAGTGCCTGGTT
TGAGGCAGGCCTTAACAAATACATAAGAAATGACTGAATGTCTTTGCATT
GGTCCTTAGGTCATCTTTGTACATAATAAGACTTTGGGGTTTCTCTCTGG
AGCCCAGAGCTATAAATTAGAAAACTGTCAGGAGAACCATGATAGGCCCT
TTGAAAGTGTGCTTTTTTTTTGTTTTN
TTTTCTTTTTTTTTTTTTTNNTGTCACACCCCCAACNTTCTANTNNTTTG
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCGGGCGTGGTGGCGCACG
CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTG
AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCAAAAAACCAAAAAAAAAAATTAAAAAAAAAAAAAAA
ATTAGTGAATTCTAGTGACCGTGAAAGGGTGTGCTTAGTCTTTTAACACT
AAATATCCTGAAGGGATTTTTTTTTTCCCTAGTATGAGGAATTAAGTCTG
GGACCTTGAGTTTAAGTTTATTACCCGGACGAAACCCCATTCCAGACTCA
GAATGTATAAAGAAAGACCTTTAGGCCGAAAAAAAGAAGAAGCATGCCTT
TAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGC
CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAGAGA
AACCCTGTCTCTTCTTTTCCCTTCATTTCTTATTTATCATATAAAGATTG
AATGACGTTTAATCTGCACAAACTACTAGTATGTTGTGGGAGTTATCCCA
TTTTTTGACATGGGGACCCCTGATATAGGCGGGATAAACCTTCCTTGTAA
GGAACTGGTGGGAACTCTCAACAAGGGCTGTGTTATTCTATACTTTTACT
GGGTGGGTGCTTGTGAAGTCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_f09.b1 MSMg01no264_f09.b1 CHROMAT_FILE:
MSMg01no264_f09.b1 PHD_FILE: MSMg01no264_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:29 2005
         (343 letters)



>mm_chr16_20648764_20649506
          Length = 743

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttctaggatacttttcctttcttgcctctcagattatgtatgactttcctgagctcctgc 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 743 ttctaggatacttttcctttcttgcctctcagattatgtatgtctttcctgagctcctgc 684

                                                                       
Query: 65  tataattgacacacgtatctcccgccttgtactttaagctccagatggtcagggaactgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tataattgacacacgtatctcccgccttgtactttaagctccagatggtcagggaactgt 624

                                                                       
Query: 125 atttgattaatcttcatgcccctagaaccaagttagtgcctggtttgaggcaggccttaa 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atttgattaatcttcgtgcccctagaaccaagttagtgcctggtttgaggcaggccttaa 564

                                                                       
Query: 185 caaatacataagaaatgactgaatgtctttgcattggtccttaggtcatctttgtacata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaatacataagaaatgactgaatgtctttgcattggtccttaggtcatctttgtacata 504

                                                                       
Query: 245 ataagactttggggtttctctctggagcccagagctataaattagaaaactgtcaggaga 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgagactttggggtttctctctggagcccagagctataaattagaaaactgtcaggaga 444

                                              
Query: 305 accatgataggccctttgaaagtgtgctttttttt 339
           |||||||||||||||||||||||||||||||||||
Sbjct: 443 accatgataggccctttgaaagtgtgctttttttt 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)