Query= MSMg01no264_k20.b1 MSMg01no264_k20.b1 CHROMAT_FILE:
MSMg01no264_k20.b1 PHD_FILE: MSMg01no264_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:56 2005
(310 letters)
>mm_chr16_54644254_54644963
Length = 710
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%)
Strand = Plus / Plus
Query: 5 gaattcagagaataaacttattgaaaaatctcaacatttatatattttctgcctttcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagaataaacttattgaaaaatctcaacatttatatattttctgcctttcatt 264
Query: 65 tattggcaagattatttcttctcttcactgtgaacttctcacttttttctggtaccattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattggcaagattatttcttctcttcactgtgaacttctcacttttttctggtaccattt 324
Query: 125 tctattattttatattgcaactattgcactttaaaacacattagatagtaaactaataac 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tctattattttatattgcaactattgcactttaaaacacattagatactaaactaataac 384
Query: 185 atatttcccaaaataaaagtatgtacaccctatcattcagcacacttctgtgtaaggaac 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 atatttcccaaaataaaagtatgtacaccctatcattcagcacatttctgtgtaaggaac 444
Query: 245 agttatcttagtataatcttcatatgttaatccagtatttattatggctctaattagtat 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttatctcagtataatcttcatatgttaatccagtatttattatggctctaattagtat 504
Query: 305 ccattg 310
||||||
Sbjct: 505 ccattg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no264_k20.g1 MSMg01no264_k20.g1 CHROMAT_FILE:
MSMg01no264_k20.g1 PHD_FILE: MSMg01no264_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:56 2005
(286 letters)
>mm_chr16_54843076_54843763
Length = 688
Score = 514 bits (266), Expect = e-150
Identities = 282/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 1 ccaggaggcaagaactacttcagacagataccaatggcataatccagggtacttcctggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 488 ccaggaggcaagaactacttcagacagataccaatggcataatccagggtactttctggt 429
Query: 61 atgcatgcacaacttgagagtaaaggcactcacatggtcaggattagagcaagagaccgt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgcatgcacaacatgagagtaaaggcactcacatggtcaggattagagcaagagaccgt 369
Query: 121 acttccacttgcaccggctgattgcaaggtatctgttgttttctttt--tttttttttgg 178
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 368 acttccacttgcgccggctgattgcaaggtatctgttgttttcttttcttttttttttgg 309
Query: 179 ctttcacaatgtaaatttatttttctcacaattctgtaggcaaggaatgccctctctcct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctttcacaatgtaaatttatttttctcacaattctgtaggcaaggaatgccctctctcct 249
Query: 239 tgccctgaaggtggcttccttcctgttgtgtggtcacatgacctgctc 286
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgccctgcaggtggcttccttcctgttgtgtggtcacatgacctgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 688
Length adjustment: 9
Effective length of query: 277
Effective length of database: 679
Effective search space: 188083
Effective search space used: 188083
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
