BAC Information

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BAC

Clone NameMSMg01-264N13
Chromosome16 (Build37)
Map Location 52,415,905 - 52,416,217
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneCblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264N13.T7 (MSMg01no264_n13.b1)MSMg01-264N13.TJ (MSMg01no264_n13.g1)
ACCAG406280AG406281
length726816
length of high quality
(start - end)
317 (46 - 362)167 (130 - 296)
definitionCHROMAT_FILE: MSMg01no264_n13.b1 PHD_FILE: MSMg01no264_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:09 2005CHROMAT_FILE: MSMg01no264_n13.g1 PHD_FILE: MSMg01no264_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTTATTTACATTTGAAAGATAGAAGCTGTACAAACAGCTTGC
TATTCTCTTTCTTTTGGGTTCAGAATAGTGAATGGGAACATTGTAAATGC
CTTGCATGTGGAGGAGACTATATAGGATGTGGTACATGTTTGCTTTATGA
AACTATTATTCTAATGCTAAAGTATGTTGTATTAGCCATGCTTTAGACAT
GACTTTATTGAAAGATCTGATGGCTAAGCAGCTTGTATTCATCCTAGGAC
GCCATCAAATGCCTCTCTAGTATAACAGTATACTATTATAGTTTAATATA
TATAATATTCTATTATAATGCCACCCCCCCCACTCTACTAGTATATTCAA
ATGGATAATAATAAAATTTCCTGTAAGATTAAAATAATTAACAAACTAGA
AAATGTAAGTCTTAAGGAAATCTTATTTTTAAGTTGAAATGGCTTCTACT
AATCTGATTTAGCAGTATATTATAGCAAAAACAATCTAAAGGACATTAGA
TTGGCCCTGCTTTACTTTACTAAAAGGCTCAGTGGTCTGTAAATTATATT
ATATCTATTTTAATATATTTTGTGAATGATGACAGTCACTGTCTCATGCA
TAGTCCTTGTTAATAGTGTCCACTTTCTTTTCTTTTTTTTTTTTTTTTTA
AGATTTATTTATTGTTAATTGAAATN
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCCAGGAATTCAATATCCTTAGCCACCAAGGGAAG
GCAAATTAATACTCTTTGAAATTTTCTCTCACCAAAGTCAGAATGACTGT
TTAAAAAGGAAAAAGAATGTTGGCATGTATGTGTGGGGGGAGGGGTGCAC
CTATTCACTGCTGGTGAAAGTATAACTTATGCAGCCAAAGTAGAATATGT
ATGAAATTTCCTCAAAATTTTCAAAGTATATCTACCATTTGATTGATCTA
TACCACTCTTGGGAATGAACCTCTTTTTTTCTGTATACTACTATAGGCAT
ATATAGGATCATCTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTGTATTTT
TCCTATATGTTTATTATCTCCCCCCCTGAATAATGAAAATAAGGTTTTAA
TTAGAGACAGTATCTTAATCGCTACTGTATAATTACTTAAATAAATCACA
TAAATTTTAAACTAATTCTTTATAATTATTGATAAATTTATTTATACTAA
ATAAATCATTTATTTTTTCTTACAATTCATAATATATAACTAAAAATAAT
TATAATACACACTACTACTATTGTAATTGCTTATTTTAACTCCTCATTAT
TCACTCACTTTCATCTTCTTACTTTTAATTATCTACTTAAATTAACGCTA
CCATCGATCAATGAAAAATTCTAATTCATATCTATTTATTATACTCATAA
CCATTATTTGTCCACAGCTCAACTTACTCTTTCATCTATACAAATTCACA
CCTCAACTTATTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_n13.b1 MSMg01no264_n13.b1 CHROMAT_FILE:
MSMg01no264_n13.b1 PHD_FILE: MSMg01no264_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:09 2005
         (317 letters)



>mm_chr16_52415701_52416417
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttttatttacatttgaaagatagaagctgtacaaacagcttgctattctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttttatttacatttgaaagatagaagctgtacaaacagcttgctattctctt 264

                                                                       
Query: 65  tcttttgggttcagaatagtgaatgggaacattgtaaatgccttgcatgtggaggagact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttttgggttcagaatagtgaatgggaacattgtaaatgccttgcatgtggaggagact 324

                                                                       
Query: 125 atataggatgtggtacatgtttgctttatgaaactattattctaatgctaaagtatgttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atataggatgtggtacatgtttgctttatgaaactattattctaatgctaaagtatgttg 384

                                                                       
Query: 185 tattagccatgctttagacatgactttattgaaagatctgatggctaagcagcttgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattagccatgctttagacatgactttattgaaagatctgatggctaagcagcttgtatt 444

                                                                       
Query: 245 catcctaggacgccatcaaatgcctctctagtataacagtatactattatagtttaatat 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 catcctaggacgccatcaaatgccactctagtataacagtatactattatagtttaatat 504

                        
Query: 305 atataatattcta 317
           |||||||||||||
Sbjct: 505 atataatattcta 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)