BAC Information

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BAC

Clone NameMSMg01-265D24
Chromosome16 (Build37)
Map Location 34,396,594 - 34,396,882
singlet/doubletsinglet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265D24.T7 (MSMg01no265_d24.b1)MSMg01-265D24.TJ (MSMg01no265_d24.g1)
ACCAG406567AG406568
length310750
length of high quality
(start - end)
---291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_d24.b1 PHD_FILE: MSMg01no265_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:41 2005CHROMAT_FILE: MSMg01no265_d24.g1 PHD_FILE: MSMg01no265_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTTCTCTTTACCAAAAAACACCCCCCCTTCTTTTTCACTTTACCTC
CCCTTTAATCCTCTCCTTTCATTCTCCCACTTTCTCCCCCCCACCCCCCA
TCACTTTTCTTCACTATATCTATTTTTTACTTTCTCTTATTTTTATTTTT
CCCCTACTCCCCNNNAAATACCCATCCTCATTATCTCTAAAAATTCCTTC
CTCTACCCNCCCTATTCGCTACACCTAAGGAAGATCGGATCTAACATCAC
ACAGTGATACACATCTTGTCAATGAGCCCGCTAGCCTGCATCAAAATGGC
GTTTTAACAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATCTCAGAACATAAGAAAATAT
TTTTGTTATGAAATTAAGACATTTATTGGATGAGGGAATGGGTTAAGGTA
CCATTCCAAGCATCTGATAAGCATGGTTTATAAACATTCATGCTCTTCCA
AAACAAGACACAGTCCAGTCTCAATGGCCTGGAAGATGAATTATTAATAC
ACAGCTCCTGGATAACCTTTATTAGTGTGGAACCTAAGTGATGGATTGCA
GCTAAGACCTGAATATCTGAAACCCTGTACAAGAGGAGGAATCTCTGACA
CTCTCTTTGCCTCACTTTGTGTAATTACACCCACCTGGGGTTCTGTTTCT
AATGCAGTGTTTGATTCTATTGCTATTGAATGAGACCTGGGATCCTGAGT
TTCTAGCAAGTTCTAGGTGGCAGGTGATAGCTGTTACTTTGAAGAACAAG
ACTATGGGGCTAGCTAATAGGAATCCTTTCAAGGTGACACCATGTCACCA
ATTTACATGCTGCACAAAATAAATATGCCTTGCTACTGAGCACCCTAAGA
ACTCATTCAGCCAACACTGGTTTGTGTGTGATTTTGATGTTTCCCTCTTC
TCAGGGTCATTCAAATGTGCTAGGTAGGCCTTGTGTTAGACTGTGCTAAT
ACCAAGGCAAATAAGAACTGGATTTTGCTTTCCAGGAACTTCCAAGCAGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_d24.g1 MSMg01no265_d24.g1 CHROMAT_FILE:
MSMg01no265_d24.g1 PHD_FILE: MSMg01no265_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:41 2005
         (291 letters)



>mm_chr16_34396394_34397084
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctcagaacataagaaaatatttttgttatgaaattaagacatttattggatgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agatctcagaacataagaaaatatttttgttatgaaattaagacatttattggatgaggg 430

                                                                       
Query: 61  aatgggttaaggtaccattccaagcatctgataagcatggtttataaacattcatgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatgggttaaggtaccattccaagcatctgataagcatggtttataaacattcatgctct 370

                                                                       
Query: 121 tccaaaacaagacacagtccagtctcaatggcctggaagatgaattattaatacacagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tccaaaacaagacacagtccagtctcaatggcctggaagatgaattattaatacacagct 310

                                                                       
Query: 181 cctggataacctttattagtgtggaacctaagtgatggattgcagctaagacctgaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cctggataacctttattagtgtggaacctaagtgatggattgcagctaagacctgaatat 250

                                                            
Query: 241 ctgaaaccctgtacaagaggaggaatctctgacactctctttgcctcac 289
           ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgaaaccctggacaagaggaggaatctctgacactctctttgcctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)