BAC Information

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BAC

Clone NameMSMg01-265I20
Chromosome16 (Build37)
Map Location 25,328,165 - 25,328,451
singlet/doubletsinglet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265I20.T7 (MSMg01no265_i20.b1)MSMg01-265I20.TJ (MSMg01no265_i20.g1)
ACCAG406783AG406784
length797773
length of high quality
(start - end)
111 (37 - 147)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no265_i20.b1 PHD_FILE: MSMg01no265_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:04 2005CHROMAT_FILE: MSMg01no265_i20.g1 PHD_FILE: MSMg01no265_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
CTTGCGGGGGGGGGGGTCTGAGACTGTGTGAACATATTGTTTTTGTGTAT
GTATGTCTGTGTGCCTCTGTGTGCAAGTATTGTTGGGGTGTGTGTGTGTG
TATATGTAAATAAAAANAATTATTTATTTTTTTTTACATCACTACCCTAT
TATCTATAAATAAAAATCCACACCCCCAATACTAACCCACATATATAAAC
AAATACTTTTTTTTCCACCCCACCCAATCACCCTCTCATACATACCCAAC
TCAACATCTTAATTTTTTTTACTTCCACACTCCTCTTTTCCATAAAAGGA
AATATTTTTAGTAGATTTCCCCCAACAACCCCCATTTTATATTTTATTTT
TATTGTAATGGTATTTCCCCCCCCCTAAAAAAAAAAAAAAAAAACACCAA
ACCACATAAAGCAATCATCAAATTCTACCCAAAAAATATTTACCTTTCAC
TTTCCTTCTAATTTTTTTCCTTACTAATAACTCCAACACATACCATACCC
AATCTATATAATTATCATAATCACAACTCACAATAATCAACAATATCCAC
CATCATTCTCCTATATACATACAATATAAAAACAAATAAAACAAAAATTT
ATAAATATATTAAAATTATAACAAATTAAAATATAATAAACAAATAACAA
TTACTCTCCATCCACACCCCCTATCTACACCCACTACACTCACTCACATT
TCCCATAATCAAAATAAATTCTCTTTCCCTTATTCACACAACATCAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGCCAGGACAAAAGAGTTAAC
AGTAAAACACAGAGTTCAAGACCAAGTGGAATATGCAAATACAAGAACCA
CACTTAGGCTCCTGGAGGATTTGGAGGAGGAGGTGTGGCCATTTTTAACT
AATCCTAAATACAGAGTGTTTGGTCTTCTCTAAGTGAAATGATGTCTTCT
TCCCCTCAGCCAGGGGCCATTGAGACTGCTGTGGAAGACTTGAAAGGCCA
CATAGCACAGACTTCTGGGGAGACTGTTCAAGGCTTCTGGCTCCTGACAG
AGTGAGTATGTGTTTTGTTGTTCCCCCCCCCCCCCCGGTGACATCACTGG
AAAAGGAGAAGGACATGTCCCCCGCGCTCCCAAGAGATTGTATATGGTGA
TTTCCTGATGTTTCCAACTGGACATCGATGTTTTACTTATCTGGCTGAGT
GGATGGGTTTGACTCTGCCTTTTCTGGATTGCTCCTTCCATCCAGATACT
GCCGGCCATGACTCAGGTCCGTGTAACTGCTTTTCTTGTATAATTGTCTG
TTGCCTTCCCTAGTTAATCAGGTTCTGTAACTCCTCTCCACTTTGTAGCA
AGATTCATCTGTTTACATATTCTCTGTTTTTACCTTTTCTATGATTTCAT
ATGTGATATTATATTTTATTACTTATTGCGGTGATGGATTTCTCTTTCCT
ATATTTGCTGTCCTGAAACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_i20.g1 MSMg01no265_i20.g1 CHROMAT_FILE:
MSMg01no265_i20.g1 PHD_FILE: MSMg01no265_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:04 2005
         (287 letters)



>mm_chr16_25327965_25328651
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggccaggacaaaagagttaacagtaaaacacagagttcaagaccaagtggaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttttggccaggacaaaagagttaacagtaaaacacagagttcaagaccaagcggaatatg 260

                                                                       
Query: 61  caaatacaagaaccacacttaggctcctggaggatttggaggaggaggtgtggccatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatacaagaaccacacttaggctcctggaggatttggaggaggaggtgtggccatttt 320

                                                                       
Query: 121 taactaatcctaaatacagagtgtttggtcttctctaagtgaaatgatgtcttcttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactaatcctaaatacagagtgtttggtcttctctaagtgaaatgatgtcttcttcccc 380

                                                                       
Query: 181 tcagccaggggccattgagactgctgtggaagacttgaaaggccacatagcacagacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagccaggggccattgagactgctgtggaagacttgaaaggccacatagcacagacttc 440

                                                          
Query: 241 tggggagactgttcaaggcttctggctcctgacagagtgagtatgtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggagactgttcaaggcttctggctcctgacagagtgagtatgtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)