BAC Information

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BAC

Clone NameMSMg01-266C05
Chromosome16 (Build37)
Map Location 84,609,017 - 84,609,308
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
Downstream geneLOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266C05.T7 (MSMg01no266_c05.b1)MSMg01-266C05.TJ (MSMg01no266_c05.g1)
ACCAG407207AG407208
length726734
length of high quality
(start - end)
519 (46 - 564)292 (439 - 730)
definitionCHROMAT_FILE: MSMg01no266_c05.b1 PHD_FILE: MSMg01no266_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:50 2005CHROMAT_FILE: MSMg01no266_c05.g1 PHD_FILE: MSMg01no266_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTTTCAGACTTTTATCATGAATGGGTGTTGGATTTTGT
CAAATGCTTTCTCAGCATCTAATGACATGATCATGTGGTCTTTGTCTTTG
AGTTTGTTTATATAATGGGTTACATTGATGGATTTCCGTATATTAAACCA
TCCCTGTAACCATGGAATGAAACCTACTTGGTTAGGATGGATGATTGTTT
TGTTGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGCA
TCGATATTCATAAGAAAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATC
TTTCTGTGGTTTAGGTATCCGAGTAATTGTGACTTCTTAGAATGAATTGG
GTAGAGTACCTTCTGCTTCCATTTTGTGGAATAGTTTGTGCAGAACTGGG
ATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGG
TCCTGGGCTTTTTTTGGGTGGGAGACTATTTATAACTGCTTCTATTTCTT
TAGGGGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTT
GGTACCTGGTATCTGTCCAGAAATTTGTCCTTTTCGTCCAGGTTTTCCAC
GCTTGTTGTATACATCCTTTTGTAAAAGGATTTGATGCCGCTTGCATCTC
TTACCATCCGTTGTTATTTCCCCTTN
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATTGAACCTTGAGCCTCCTGAC
ATACAGCACCAAGAATGATCATGAAACCCATGTGGGCTCCCCAGGAACCT
CTGGCTTTGTATTGGCTGGGTTTGTGTGTCAGCCTGACACAAGCTGGAGC
TATCACAGAGAAAGGAGCCTCCCTGGAGGAAATGCCACCATGAGATCCAG
CTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAGGGCCTAGCCCATT
GTGGGTGATGCCATCCCTGGGCTGGTATTCCTGGGCTCTTTAAGAAAGCA
AGCTGATCGAGTCATTTTTTTTTAAGCCACCCACCTAACATCCCTCCAAG
GACTCTGTATCAGCTCCTGCTTCCCGACCTGACTGAATTTCTGTCCTGGT
TTCCTTTGGTGATGTACAGCAATGTGAGCTGAATAAAACCTTTCCTTCCT
AACTTGCTTCTTGATCATGATGTTTGTACAGGAATAGAAACCCTGATTAA
CCAGGCATCCAGAAGAGAATCTTCATCATTCCCCTACTAGACAATTGGCA
AAGGACACAGTGTTTTGCCTAGAGCTGCACACAGGTAGGAGTAAGAAAAA
TGAGTTCCTTCCATTTAAATATATTAGAAATTCCTTCCTATTAAAAACAC
ATAAAGGGAAGAAAAAACTGTTTCTTTTTGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_c05.g1 MSMg01no266_c05.g1 CHROMAT_FILE:
MSMg01no266_c05.g1 PHD_FILE: MSMg01no266_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:50 2005
         (292 letters)



>mm_chr16_84608817_84609508
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtcctggtttcctttggtgatgtacagcaatgtgagctgaataaaacctttccttc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttctgtcctggtttcctttggtgatgtacagcaatgtaagctgaataaaacctttccttc 260

                                                                       
Query: 61  ctaacttgcttcttgatcatgatgtttgtacaggaatagaaaccctgattaaccaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaacttgcttcttgatcatgatgtttgtacaggaatagaaaccctgattaaccaggcat 320

                                                                       
Query: 121 ccagaagagaatcttcatcattcccctactagacaattggcaaaggacacagtgttttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaagagaatcttcatcattcccctactagacaattggcaaaggacacagtgttttgc 380

                                                                       
Query: 181 ctagagctgcacacaggtaggagtaagaaaaatgagttccttccatttaaatatattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagagctgcacacaggtaggagtaagaaaaatgagttccttccatttaaatatattaga 440

                                                               
Query: 241 aattccttcctattaaaaacacataaagggaagaaaaaactgtttctttttg 292
           |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aattccttcctattaaaaacacataaagggaagaaaaaactgtttccttttg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)