BAC Information

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BAC

Clone NameMSMg01-266O12
Chromosome16 (Build37)
Map Location 97,832,057 - 97,832,654
singlet/doubletsinglet
Overlap geneTmprss2
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266O12.T7 (MSMg01no266_o12.b1)MSMg01-266O12.TJ (MSMg01no266_o12.g1)
ACCAG407770AG407771
length728739
length of high quality
(start - end)
605 (124 - 728)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_o12.b1 PHD_FILE: MSMg01no266_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:49 2005CHROMAT_FILE: MSMg01no266_o12.g1 PHD_FILE: MSMg01no266_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAAGTTACGAAAAACCCGCACCGTCGCCTCGGGTCACCGCACGC
GATGGTTGAGCACTTTCTTCCCACAGGTGACAGACAATTCCCGTCTTGCC
AAGGTCCCCAGGGCCCAGCAGCGCCGCCTGTATCGGCCCTTGGCATCTCA
GCCAGTTTTCAGTTTCTCTCCACCTCTGTAGAGACCAAGGAGCGGAAGGA
GTTCAGGTAACCAGCCCGACTGCCGACTGCCGAGATTTTCCCGAAACAAA
GAGAACTGCGGACAAACCTCTAGCTCTGCGCTCTAGGAAAGGATATCAGC
ACGTGACGCGATTCAAGGGCTTGCTCCACTGAAGGACCCCGGCCCCTAGG
AACTCTCTTCTCCAAGCTATTAGTCAGGGATCCGCAAGACCACAAGCCAA
GCCGCTCGAATCTATAGAGTTGATTTGGGATCTCTGCCGCGCGTCACGGA
ATCGGGGTCGTCGGGACCCCTTCCCAGTCCCCAGGACGTACACTCGGGCG
AATCAGTCAGACGGTCGCACCTGTAGTGCCTTGGCCTCTCCTAACTCACT
TGTACCCTAGACGCCCAGGCCCGGCACCGCCGGATGGACCCAGGTCACCC
CATTTCCTTTTCTGTGCCGGGACCGGAGCTTGTCCAGCGCGCTACTCACC
TGTTGCGCTTCCCGCCCTTCTCCGCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGCTATCAGGACTTTGTAGAA
CAGTGTTTCTCAACCTTCCTAATACTGTGACCCTTTAATACAGTTCATGT
TGTGGTAATCCCCAACCATAAAATTATTTTGTTGCTACTTCGTAACTGTT
ATTTTGCTACTGTGGTGATTCATAATGTAAATATCTGATATGCAGAATAT
CTGATATGTGGCCCCCAAAGGGGTTATAATGCACAGGTTTCGAACCATTG
ATGCAAAGAGACCTACCTTGTCTTTAAAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAATTATGTTTGAAACACCCCCCCACAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAACCAAAAGCCAGCCAGCAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGGCCAGCCAGCCAGCCATACTTTACTAGGAGGAAAC
AGCTTTCCCTCTAATGGGCTTCTTGACAAAGCCCTGCTAACCTTACTTCT
AAGGAGAGGCCATTGTGGTACTTCCCCAGGGGTCCTGGAAATAGTGTTCA
AAGCTGATTGTGAGGGTGGGGTCCATCCATAATGACACCCAGGCCAGCTA
ACATCTACCTCTTCTTCGTATAGTTTCCTGCTGTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_o12.b1 MSMg01no266_o12.b1 CHROMAT_FILE:
MSMg01no266_o12.b1 PHD_FILE: MSMg01no266_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:49 2005
         (605 letters)



>mm_chr16_97831857_97832861
          Length = 1005

 Score = 1064 bits (550), Expect = 0.0
 Identities = 589/606 (97%), Gaps = 9/606 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgacagacaattcccgtcttgccaaggtccccagggcccagcagcgccgcctgtat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgacggacaattcccgtcttgccaaggtccccagggcccagcagcgccgcctgtat 260

                                                                       
Query: 61  cggcccttggcatctcagccagttttcagtttctctccacctctgtagagaccaaggagc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcccttggcatcttagccagttttcagtttctctccacctctgtagagaccaaggagc 320

                                                                       
Query: 121 ggaaggagttcaggtaaccagcccgactgccgactgccgagattttcccgaaacaaagag 180
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 321 ggaaggagttcaggtaaccagcccgactgccga-------gattttcccgaaacaaagag 373

                                                                       
Query: 181 aactgcggacaaacctctagctctgcgctctaggaaaggatatcagcacgtgacgcgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 374 aactgcggacaaacctctagctctgcgctctaggaaaggatatcagcacgtgacgcgagc 433

                                                                       
Query: 241 caagggcttgctccactgaaggaccccggcccctaggaactctcttctccaagctattag 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 434 caagggcttgctccactgaaggaccccggcccccaggaactctcttctccaagctattag 493

                                                                       
Query: 301 tcagggatccgcaagaccacaagccaagccgctcgaatctatagagttgatttgggatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494 tcagggatccgcaagaccacaagccaagccgctcgaatctatagagttgatctgggatct 553

                                                                       
Query: 361 ctgccgcgcgtcacggaatcggggtcgtcgggaccccttcccagtccccaggacgtacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctgccgcgcgtcacggaatcggggtcgtcgggaccccttcccagtccccaggacgtacac 613

                                                                       
Query: 421 tcgggcgaatcagtcagacggtcgcacctgtagtgccttggcctctcctaactcacttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcgggcgaatcagtcagacggtcgcacctgtagtgccttggcctctcctaactcacttgt 673

                                                                       
Query: 481 accctagacgcccaggcccggcaccgccggatggacccaggtcaccccatttccttttct 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 674 accctagacgcccaggcccggcaccgccggacggacccaggtcaccccatttccttttct 733

                                                                       
Query: 541 gtgccgggaccggagcttgtccag-cgcgctactcacctgttgcgcttcccgcccttctc 599
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct: 734 gtgccgggaccggagcttgtc-aggcgcgctactcacctgttgcgcttcccgcccctctc 792

                 
Query: 600 cgcctc 605
           ||||||
Sbjct: 793 cgcctc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)