Query= MSMg01no267_m07.b1 MSMg01no267_m07.b1 CHROMAT_FILE:
MSMg01no267_m07.b1 PHD_FILE: MSMg01no267_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:54 2005
(321 letters)
>mm_chr16_49374553_49375273
Length = 721
Score = 571 bits (295), Expect = e-167
Identities = 307/311 (98%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 7 attcagctatgggaagtccccagttcccctagggcctgggaccttgaatttagtttctct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcagctatgggaagtccccagttcccctagggcctgggaccttgaatttagtttctct 266
Query: 67 ctatgattaaatggagtctgaaaattaaatggtagtacttagaataagtttcttttgctt 126
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 ctatgattaaatggagtctgaaaattaaatggtagtacttagaatacgtttcttttgctt 326
Query: 127 gttgccaacaatgatacaatacttttcttctctacaatgcacagccagtcacagattggc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gttgccaacaatgatacaatacttttcttctctacaatgcacagccagtcacagattggc 386
Query: 187 aggctttgagtagaaccatttaattgatgtttttggtccacacagattaaaaaaaaaaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggctttgagtagaaccatttaattgatgtttttggtccacacagattaaaaaaaaaaaa 446
Query: 247 aaaaaaacaatcactaaaggtgtaacatgtaccatcaggttttctgttttcttgtaaaat 306
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 447 aaaaaa-caatcactaaaggtgtaacatgtaccaactggttttctgttttcttgtaaaat 505
Query: 307 atcattgaaaa 317
|||||||||||
Sbjct: 506 atcattgaaaa 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_m07.g1 MSMg01no267_m07.g1 CHROMAT_FILE:
MSMg01no267_m07.g1 PHD_FILE: MSMg01no267_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:54 2005
(557 letters)
>mm_chr16_49524034_49524993
Length = 960
Score = 872 bits (451), Expect = 0.0
Identities = 486/499 (97%), Gaps = 3/499 (0%)
Strand = Plus / Minus
Query: 62 gtattttgagtcttttgaacaggttctatcaatgaatccacagtttcagctagaatggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gtattttgagtcttttgaacaggttctatcaatgaatccacagtttcagctagaatggct 901
Query: 122 gaccaaggaggcccctgggagccacctgtctctgtcttcctgttctgtggttataggcac 181
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 900 gaccaaggaggcccctgggagccacctgtctctgtcttcctgttctggggttataggcgc 841
Query: 182 aaacaatcttgcctaacttttgcttaggttctgtggattcaaacccaggtctctgtggtt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaacaatcttgcctaacttttgcttaggttctgtggattcaaacccaggtctctgtggtt 781
Query: 242 gtacaacactcactttaccgttacggaatctgtctaggctctcaataaatttcatgagtc 301
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 780 gtacaacactcactttaccattacggaatctatctaggctctcaataaatttcatgagtc 721
Query: 302 tccttcagttaaccaatatttgtatccctcttcctaaatatgttccgcaatatatttgta 361
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 720 tccttcagttaaccaatatttgtatccctcttcctaaatatgttttggaatatatttgta 661
Query: 362 aaatgtaaagaatgcatggacccaggattctgactcaacaggaaagacatacttttg--- 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaatgtaaagaatgcatggacccaggattctgactcaacaggaaagacatacttttgttc 601
Query: 419 ttctcaaatcaacagccatggctgaaaaccagcagcagaagaggagacgcataggaacta 478
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 600 ttctcaaatcaacagccatggctgaaaaccagcagcagaagagtagacacataggaacta 541
Query: 479 tgtttccctgtgggacacttacaaggtcctaatcttttgttgatttatagcagttttcct 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtttccctgtgggacacttacaagttcctaatcttttgttgatttatagcagttttcct 481
Query: 539 tggcatcagagaaacaaag 557
|||||||||||||||||||
Sbjct: 480 tggcatcagagaaacaaag 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 960
Length adjustment: 10
Effective length of query: 547
Effective length of database: 950
Effective search space: 519650
Effective search space used: 519650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
