BAC Information

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BAC

Clone NameMSMg01-267N20
Chromosome16 (Build37)
Map Location 56,578,670 - 56,579,019
singlet/doubletsinglet
Overlap geneAbi3bp
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneTfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267N20.T7 (MSMg01no267_n20.b1)MSMg01-267N20.TJ (MSMg01no267_n20.g1)
ACCAG408464AG408465
length773733
length of high quality
(start - end)
313 (45 - 357)350 (384 - 733)
definitionCHROMAT_FILE: MSMg01no267_n20.b1 PHD_FILE: MSMg01no267_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:01 2005CHROMAT_FILE: MSMg01no267_n20.g1 PHD_FILE: MSMg01no267_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCAGCTTCTTGAGTTCATTGTATATATTGGATATTAGCCTTCTA
TTAGATGTAGGGTTGGTAAAGATCTTTTTCCAATCTGTTGGTTGCCATTT
TGTCCTATTGACAGTGTCCTTTGCCTTACATAAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTAGAGCACAAGCCATTGGTGTTCTG
TTCAGGAAATGTTCCCCTATGCCCATGTGCTTGAAACTCTTCCCCACTTT
CTTTNCTATTAGTTTCATTGNATCTCGNNACCANGACCCGGTTCTTGATC
CACTTGGACTTGAGCTTTGTACNAGGAGATAAATATAAAACAACTTGCGT
TCTTGTACATGCTAACCACCATATCACAGCCATCCGTTGTACTGAGCACA
AGGTCTCCATTGAATGATCTAGAGAAAGATCCCCCCGAGTTGAAGTGGTT
CGCTTCCCCCTACGATGAACTCCTTAACGTACTATTCTGCCACCCCCTCA
GCTCTTATGTAACAAACCCACCATTTCCCATAGCACACTCGGTGGTATCT
CATGGCTCTCCGCTTGCTTTTGTACCAATATGATTGGCTTTAGCTTGCTC
ATTCCACGTGAAACATATATCCCTCGTTTTCTGTTGCAAGCTTTTTATGT
CCTCTTTGTGTAGGCAAATTGTT
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGATGGAGTTTGTGGTTGTTCTTTT
TAAATTCTGTGTCTTGAGATCCCTCTGGTAATTGTGAGGATGATTTCTAG
GACTGGTAGGATTTGTTGGGAGACACTGCCTTGCTCTTTTACTTTGTTTG
TATGTTTACAATGAGATCTAGACATGAGGACCTCTTCTGCTCTTTATGTG
TCTGATAAGGACAGAGCTGGTTGGGGCAGGACACAGGATGTGAAGGATAG
TTTGAGCCTAAAAGTTAGATATATCTTAGTTCGAAGGAAGTCATATGGAC
ATGGGTCTGTTTTGGTGTGCACCCACCCGCCTCTAGATGCAACCTGAAGT
CTGTGACATTATTTTCTATGAATTGTCTAACTTAAATTACGTGATCATTG
ACTTACTCAGTTCCCAGGTTATAGGCATTTTTATTTTTTGTAATTGACTT
TTAATTTGAAATAATCAAAATGCCTATTAACAGGTCAGATTTTTAACTTT
TTAAGGGCCTTTGGTATGAATGGACAAATTTTCTAAGATTATCCCAGCTT
ATGGTCTTACAAGTAGATAACAAGAGTTTATCCTGTTTATCAACAGTATG
TATTTGTATCAGTAACGTCTGGCTAATATAACAGCTTAATAGTTATATTA
ATTTCTATATCTGTGAGGGCTGATAGAGTGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_n20.g1 MSMg01no267_n20.g1 CHROMAT_FILE:
MSMg01no267_n20.g1 PHD_FILE: MSMg01no267_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:01 2005
         (350 letters)



>mm_chr16_56578470_56579219
          Length = 750

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatgcaacctgaagtctgtgacattattttctatgaattgtctaacttaaattacgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tagatgcaacctgaagtctgtgacattattttctatgaattgtctaacttaaattatgtg 260

                                                                       
Query: 61  atcattgacttactcagttcccaggttataggcatttttattttttgtaattgactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcattgacttactcagttcccaggttataggcatttttattttttgtaattgactttta 320

                                                                       
Query: 121 atttgaaataatcaaaatgcctattaacaggtcagatttttaactttttaagggcctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgaaataatcaaaatgcctattaacaggtcagatttttaactttttaagggcctttg 380

                                                                       
Query: 181 gtatgaatggacaaattttctaagattatcccagcttatggtcttacaagtagataacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgaatggacaaattttctaagattatcccagcttatggtcttacaagtagataacaa 440

                                                                       
Query: 241 gagtttatcctgtttatcaacagtatgtatttgtatcagtaacgtctggctaatataaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtttatcctgtttatcaacagtatgtatttgtatcagtaacgtctggctaatataaca 500

                                                             
Query: 301 gcttaatagttatattaatttctatatctgtgagggctgatagagtggta 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttaatagttatattaatttctatatctgtgagggctgatagagtggta 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)