Query= MSMg01no267_o02.b1 MSMg01no267_o02.b1 CHROMAT_FILE:
MSMg01no267_o02.b1 PHD_FILE: MSMg01no267_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:02 2005
(318 letters)
>mm_chr16_37070666_37071383
Length = 718
Score = 551 bits (285), Expect = e-161
Identities = 306/313 (97%), Gaps = 3/313 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttcccaccacccgatttaaaaagaaaagttccttgtccacacctactaggga 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaattcagttcccaccaccctatttaaaaagaaaagttccttgtccacacctactaggga 300
Query: 65 tcctacagaccatcc-cactgtggcctccctttccccaagcctccaacaccaacaagtac 123
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcccacagacca-ccacactgtggcctccctttccccaagcctccaacaccaacaagtac 241
Query: 124 tctctgaaaacataccaacctcgcaggacagtaatacaggcagcatatagccaacacact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctctgaaaacataccaacctcgcaggacagtaatacaggcagcatatagccaacacact 181
Query: 184 ctctgaaaacacagagaaaagaaaacccaaagaacagaacatctactcaacaaagacaga 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctctgaaaacacagagaacagaaaacccaaagaacagaacatctactcaacaaagacaga 121
Query: 244 cccagaaaccagcacctgacctaaaattaccatgaactcagatgcctagatgccagcata 303
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 120 cccagaaa-cagcacctgacctaaaattaccataaactcagatgcctagatgccagcata 62
Query: 304 agaatacaattac 316
|||||||||||||
Sbjct: 61 agaatacaattac 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_o02.g1 MSMg01no267_o02.g1 CHROMAT_FILE:
MSMg01no267_o02.g1 PHD_FILE: MSMg01no267_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:02 2005
(655 letters)
>mm_chr16_36891137_36892191
Length = 1055
Score = 1228 bits (635), Expect = 0.0
Identities = 649/654 (99%)
Strand = Plus / Plus
Query: 1 ttttttgtagcaaagtataaattagaagggagtagggtaggtattcaagatagatgagaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttgtcgcaaagtataaattagaagggagtagggtaggtattcaagatagatgagaa 260
Query: 61 agtcaaagaaataagacatccaagtgctttgcttaagtgaatattccccctttcagttgg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaaacaaataagacatccaagtgctttgcttaagtgaatattccccctttcagttgg 320
Query: 121 ataagagttctgcagagatggaagactttgtcctgatgaagcagcagctccaagaaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagagttctgcagagatggaagactttgtcctgatgaagcagcagctccaagaaaagg 380
Query: 181 aagaactcatcagcactttgcaaacacagctcagccagacacaggcagagcaagctgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaactcatcagcactttgcaaacacagctcagccagacacaggcagagcaagctgccc 440
Query: 241 aggtaggacggtggcaccttcactagattcatgagatccagagtgttaaatgtggcacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtaggacggtggcaccttcactagattcatgagatccagagtgttaaatgtggcacgt 500
Query: 301 cagtcccagcagtcactttcagagcttggtagatgaaagcatggcagttggatgtcacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtcccagcagtcactttcagagcttggtagatgaaagcatggcagttggatgtcacac 560
Query: 361 taggagggtgtggaagagttagaagtgtggtgagtatatggcgagtgatgatacgcatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggagggtgtggaagagttagaagtgtggtgagtatatggcgagtgatgatacgcatct 620
Query: 421 taacagaaaacaccagaacctctcaaaaaatactacttaggttgatgaacttgccatagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacagaaaacaccagaacctctcaaaaaatactacttaggttgatgaacttgccatagc 680
Query: 481 ttattaatgactggttttgtctcatagttccagatactccattttaacacagagagattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattaatgactggttttgtctcatagttccagatactccattttaacacagagagattg 740
Query: 541 tgtgttaggactaggcttgtactgaattcnagagagacagacagataaaaagaaatacag 600
||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct: 741 tgtgttaggactaggcttgtactgaattcaagagagactgacagatgaaaagaaatacag 800
Query: 601 attattcactccattctttccataaattaaaaccttgttaggaagccgcacctc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attattcactccattctttccataaattaaaaccttgttaggaagccgcacctc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
