BAC Information

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BAC

Clone NameMSMg01-268C17
Chromosome16 (Build37)
Map Location 30,884,378 - 30,992,678
singlet/doubletdoublet
Overlap geneAI480653
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C17.T7 (MSMg01no268_c17.b1)MSMg01-268C17.TJ (MSMg01no268_c17.g1)
ACCAG408684AG408685
length736738
length of high quality
(start - end)		320 (46 - 365)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no268_c17.b1 PHD_FILE: MSMg01no268_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:24 2005CHROMAT_FILE: MSMg01no268_c17.g1 PHD_FILE: MSMg01no268_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,884,378 - 30,884,690)(30,992,384 - 30,992,678)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTGCAGTGAGCTGTTTGTCTCGTCTGGAGGCCGTTTGGGGCCA
TGAAAGGTGGAATTCCAGTAGCACAACTCCACAGAGGAGGTCTCCATGGA
TTGTATTGGAGTGGAGTTTTCTGGAACAACACAGCACAGGGCCTCATGGG
AAGGGCTTAGCGACTGAGCCTGGACTCTGGGCACCAACTGACTATGTGTT
CTTGGAAAATTTGTTACCCACCTGTCACTCTGACCTTTGTCTTGGGACGT
GCTTCTTCATTTGTGACCCGACAGACTTGAATTCTATCGTGTCTTGGACA
CCCTGCCTCCCATTTTTTTGCGTCTACCGCTTCGCGTGTGAATCATGAAG
CTGGAATGGATCATTTCCCACGAGCAAATGACATGCTCAGAGCGCATCAA
GGCAGAGAAGACAAAACATGTGTCCAGGGGTAGAACCAGACCCATCCTGT
CCCCTGAGTAAGTCATTCCAGGAGTCTATCCATCTCCCCTGGGCTTCCAG
CAGAACATCCTCTTCGGATCTCATTCCTCCCTGAAGCTCCTACCCAACCT
CCCAACCCCACGAATCCATCCCTCAGAGCATCAGGAATGCACAGATACCC
AGGGATACTTCTCTGCATCAGACACAGCCTGCAGCTCCTGGAAACTAATG
AGTCAGGCTCCATCCCAGACTTGTCACCCTAGTTTT

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAACGAGAAATCAGCTTTGACA
GGAAGATGATCATGCATGTGACCAAATACTGAGAGAAGCAACTTAGGGGA
GGAAAGACTTATTTTGGCTCATGGGTTCAGCATGTCACATCAGGGAGGGG
TCTAGGGCCAAGTTGGTCTGTGGCTGAGAAGCAGAGAAAGAAGATTCTGG
CACTGGTGGGGCCCCAGCCTATGGGATGGCTGTGCCCACATCTGGGACAG
GCCTTCTCTACACATCCAGAGGTGTGCATACCCAATGTCCTAGATGCAGT
CCAAGCAGTTTGACAGTTGAACTTGACATCCTGCCCTGGCACCAATCAGA
CAATCTGGACAGTCTTCATTTGTGTTCTTCATTGCTAAGATGAGCGTCAT
GGTTTATTGTATGTTTCAGGACTGTTTGGCTCTGAAATAAACCCACCTGG
TGCTCACTACCTGCCCAGAAGTCTGTCTCCATTGCCGTGTCTATTGGTGA
TTGAACTTTAGTGATGAGCAGATTGCTTTTCACAAGCCTTCAAGTACTAT
ATACCCTTGTGCTGCACCCCCGTGCGCCTCTAACACCATTGTTGTTGGTA
GTGGTGGTGTCTAAGGATTTTAGGGCCTCTCCAGGGTGGTATCAGTTCCA
AGCCTCTAAGANAGGAAGAATGAGAACATGGCATTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c17.b1 MSMg01no268_c17.b1 CHROMAT_FILE:
MSMg01no268_c17.b1 PHD_FILE: MSMg01no268_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:24 2005
         (320 letters)



>mm_chr16_30884174_30884893
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctgcagtgagctgtttgtctcgtctggaggccgtttggggccatgaaaggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgcagtgagctgtttgtctcgtctggaggccgtttggggccatgaaaggtg 264

                                                                       
Query: 65  gaattccagtagcacaactccacagaggaggtctccatggattgtattggagtggagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaattccagtagcacaactccacagaggaggtctccatggattgtattggagtggagttt 324

                                                                       
Query: 125 tctggaacaacacagcacagggcctcatgggaagggcttagcgactgagcctggactctg 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctggaacaatacagcacagggcctcatgggaagggcttagcgactgagcctggactctg 384

                                                                       
Query: 185 ggcaccaactgactatgtgttcttggaaaatttgttacccacctgtcactctgacctttg 244
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 385 ggcaccaactgactatgtgttcttggaaaattagttacccacctgtcactctgaccttcg 444

                                                                       
Query: 245 tcttgggacgtgcttcttcatttgtgacccgacagacttgaattctatcgtgtcttggac 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 tcttgggacgtgcttcttcatttgtgacccgacagacttgaattctatcgtgtcttagac 504

                        
Query: 305 accctgcctccca 317
           |||||||||||||
Sbjct: 505 accctgcctccca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_c17.g1 MSMg01no268_c17.g1 CHROMAT_FILE:
MSMg01no268_c17.g1 PHD_FILE: MSMg01no268_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:24 2005
         (295 letters)



>mm_chr16_30992060_30992754
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaacgagaaatcagctttgacaggaagatgatcatgcatgtgaccaaatactgagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attaacgagaaatcagctttgacaggaagatgatcatgcatgtgaccaaatactgagaga 560

                                                                       
Query: 61  agcaacttaggggaggaaagacttattttggctcatgggttcagcatgtcacatcaggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 agcaacttaggggaggaaagacttattttggctcatgggttcagcatgacacatcaggga 500

                                                                       
Query: 121 ggggtctagggccaagttggtctgtggctgagaagcagagaaagaagattctggcactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggggtctagggccaagttggtctgtggctgagaagcagagaaagaagattctggcactgg 440

                                                                       
Query: 181 tggggccccagcctatgggatggctgtgcccacatctgggacaggccttctctacacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggggccccagcctatgggatggctgtgcccacatctgggacaggccttctctacacatc 380

                                                                  
Query: 241 cagaggtgtgcatacccaatgtcctagatgcagtccaagcagtttgacagttgaa 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagaggtgtgcatacccaatgtcctagatgcagtccaagcagtttgacagttgaa 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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