BAC Information

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BAC

Clone NameMSMg01-268D11
Chromosome16 (Build37)
Map Location 33,150,829 - 33,151,045
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791
Downstream geneOsbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D11.T7 (MSMg01no268_d11.b1)MSMg01-268D11.TJ (MSMg01no268_d11.g1)
ACCAG408718AG408719
length729726
length of high quality
(start - end)
100 (46 - 145)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no268_d11.b1 PHD_FILE: MSMg01no268_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005CHROMAT_FILE: MSMg01no268_d11.g1 PHD_FILE: MSMg01no268_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTACCTCTCAGAAGTGGGATCAGGCCCTATGAACATTATTGTTC
TTCCTTTTTCTAGGTTTTTTTTTTTTTGTTGTTTTGTTTTTTTCGAGACA
GAGTTTCTCTGTATAGGTCTGGCTGTCCTGGAATTCACTTTGTACACCAG
GCTGGCCTCGAACTCAGAAATCCGACTTCCTCTGCCTCCCAAGTGCTGGG
ATTAAAGGCGTGTACCACCACGCCCGGTGGATTTTTAAAATTATGTGTAT
GTGTACGTTTGAATGTGTTTCTGTACATATGAGTTCTGTCCTGACTGAGA
CTAGAATTAGTTTGTTTACCCNGTCGNACCCCCCTTATAGGTAATTGTGA
GCTATGGTGGGGCCGGCAACAGAAAAAAAAAAAATCTGCACGAGGGGCGT
CCACTCTTATCCTCTGAGACATCTCTGCAGCCGTTCATTAATACTCGTCT
CAGATTGAGTTTGCTCTATTATACATGCTTATTAAGGCTTTATGGATGAT
TTTATAGGGTTGCCTCATACTTCAAGAAAAGAGTTTATAAATTGTGCGCG
TACACGCAAGTGCACGCACATGAATGATTGTATGTGGATCCCAGGAGTTC
TCGCCTGCAAATTCAGACCAGTGCATTTCCTGGAAACAGACTGTCGAGTA
GCCTGTGATTGTCCTTATGGTTCCCATGA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAACTCTTGAGAAAGATCAAA
ATGCTACAGCCCTGGGGGGTGCGGGGGGGCGGGGTTCTTCCTCCTGCTGC
TCCTTCTGCTTGTGGTTGCTGGTATCCCGACTACAGAGATCATACTTGCC
CACAATCAGCAGGAAGTAGTCTAACAATATTGATGTCCTCTTTCCCCTCT
AACCTCTCTCTCTCCTACCTAGTGCTTGGGCGGGGGGAGTGGGGGGTGGC
AAGGAATAAGGTAGTTTTTTTTTCCATAAGGGCACCACACCCTGACTTCA
TCCCATCTTGAATCATTTCACCGGGACGAGGCCCCGTTTATGAAGATGAT
ACCAGTTCTGTCACCAACACCCGAATAAATAAATACAACCCTGGGGGGGC
CGGACTGCATCGCCAGCTGGTGGCCACTTCTGCCCACTGGGCCCAGGCAC
TGAAAGTGCTATAAAGTTGCTCCCCAGTGAGGTCTGGCCAGTGTATCACA
TCTCTCGTTCGCATCAGTCAAGCATCTAATCACAGATACTGTTGGACAAA
CGACTCTTACCCAGGATCCTTCAGCGAGGTGAACAGCTGGCTTACAGTTA
TGGTTCCCGTCATTAGTTTCTCCGAGATGTTCCTGGACCCTGCTATGCAT
ATGCCTCTGATTTTGAGGTAAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d11.g1 MSMg01no268_d11.g1 CHROMAT_FILE:
MSMg01no268_d11.g1 PHD_FILE: MSMg01no268_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:27 2005
         (239 letters)



>mm_chr16_33150719_33151363
          Length = 645

 Score =  366 bits (189), Expect = e-106
 Identities = 208/217 (95%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaactcttgagaaag-atcaaaatgctacagccctggggggtgc-----gggggggc 54
           |||||||||||||||||| ||||||||||||||||||||||||| ||     ||||||||
Sbjct: 327 tgggaactcttgagaaagtatcaaaatgctacagccctggggggcgcggggggggggggc 268

                                                                       
Query: 55  ggggttcttcctcctgctgctccttctgcttgtggttgctggtatcccgactacagagat 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggggttcttcctcctgctgctccttctgcttgtggttgctggtatcccgactacagagat 208

                                                                       
Query: 115 catacttgcccacaatcagcaggaagtagtctaacaatattgatgtcctctttcccctct 174
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 catacttgcccacaatcagcaggaagtagtctaacaatattgatgccctctttcccctct 148

                                                
Query: 175 aacctctctctctcctacctagtgcttgggcgggggg 211
           ||| |||||||||||||||||||||||||||||||||
Sbjct: 147 aacatctctctctcctacctagtgcttgggcgggggg 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 645
Length adjustment: 9
Effective length of query: 230
Effective length of database: 636
Effective search space:   146280
Effective search space used:   146280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)