BAC Information

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BAC

Clone NameMSMg01-268D14
Chromosome16 (Build37)
Map Location 52,850,259 - 52,850,599
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D14.T7 (MSMg01no268_d14.b1)MSMg01-268D14.TJ (MSMg01no268_d14.g1)
ACCAG408724AG408725
length732734
length of high quality
(start - end)
343 (388 - 730)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no268_d14.b1 PHD_FILE: MSMg01no268_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:28 2005CHROMAT_FILE: MSMg01no268_d14.g1 PHD_FILE: MSMg01no268_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGCGTTTTATGCTCAACATTCCTAGAAAATTCTCCTAGAGTTGG
GAGGGAGTAACTGGCATTCTGATCCCCTGTGGAGAGATTCTATTACCTGC
TGGAAAGAGAGTAGGGCTTTGGCCAACTTTGCAAGATTTGGGCTTCCACA
CTGATTTGCTTGACGGCCCATAAACTAGTCACACAACAGAAACTTCGAAA
GAGAACCAATTCATTCCAAAATCTTTCAAATGTGGCTAAAGCAATGACAC
AGGATCCTTTCTCATCCAGCACTAGCCTGGAGTTCCAGAAGTTAGGTACA
ATTGATCCCAGTGTTTTATTATGCACGCTGCCGCCCAAGACGAGTGGGTT
TATTGAAGAAAGAGTGTTGTATTATTGGTTTATTTATTTACAGACGCAGT
GCTGTATTGTTTTATCTTGATTTCCCTGCTTTGCCTGCTGTAACTTTGAG
ACCAACAGCCATTAGTCTTTCGTCGAAGAGGAGGAATTTCTCTCTTTATA
TATATTCTAACTTTAGAGCCCAAGACTCTGCATCATGTATTTCAGGATTT
GCCCTTGCCATGTGGCTAGTTTCCCATAAATCTGCAAGTTGAAGGATAAA
TCTTTTGACTGCCCACAGAAATTAGAACATCCTGTTACAAGGAATCTAAA
CAATTAGGAAATTTTTAAATGGGATAGATACG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTTAAAATAAAGGTGCATTC
AGCGAGATGTCTCAGAGGGTAAAGTGGCTTTCTGTGAGAGCTTAAATTCT
TGGGTTGTATTGCCATAATCCATATAACAGATCAGTATATAATCCTGGGA
ATCTGTCCTCTGACTTTCTCATGTGTGTGTACACATGAACATCAGAGACA
CTATGAAATAAAATAATTTAAAAATAATTTTTAAAAATGAAAGAAGCCCC
AATTACTACATTGAGCTTAGTCAAATCAGTGTTCAGGATGTGTGTGGGTT
GTTTTTTTGTTTGTTTGTTGTTTGCCCCCCCCCCCCGCTTTTGAATTTTG
ACACAGTGTTTCTGAAGCANTCCAGACACACAATATAAACATTACAGTGT
AGGGGGTACCCTTGAGATAAGACTGCACATGTCCTGTGCTGGCATAAAGG
GAGGTGGGAAGAGTAGGGATAAAAGAGAATCATAGAAAAAGAGAATGCTA
TATAAGATAGATGGAATGACAAACGCTAAGCAAAACATCAGCACCACCAA
CAAAACAAACATCTGTGCCTAGCATTCATTATTTCACAATAGTGAAAGAA
TGCTAGAGAGATGCATTTCATCAATAGATGATGTGTTCACACTATTCATA
ATAATGAATGTCTACAGAATCTTACTAACTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d14.b1 MSMg01no268_d14.b1 CHROMAT_FILE:
MSMg01no268_d14.b1 PHD_FILE: MSMg01no268_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:28 2005
         (343 letters)



>mm_chr16_52850059_52850799
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 339/343 (98%), Gaps = 2/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgagtgggtttattgaagaaagagtgttgtattattggtttatttatttacagacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agacgagtgggtttattgaagaaagagtgttgtattattggtttatttatttacagacgc 482

                                                                       
Query: 61  agtgctgtattgttttatcttgatttccctgctttgcctgctgtaactttgagaccaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtgctgtattgttttatcttgatttccctgctttgcctgctgtaactttgagaccaaca 422

                                                                       
Query: 121 gccattagtctttcgtcgaagaggaggaatttctctctttatatatattctaactttaga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccattagtctttcgtcgatgaggaggaatttctctctttatatatattctaactttaga 362

                                                                       
Query: 181 gcccaagactctgcatcatgtatttcaggatttgcccttgccatgtggctagtttcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 361 gcccaagactctgcatcatgtatttcaggatttgcccttgccatgtggctagtttccc-- 304

                                                                       
Query: 241 aaatctgcaagttgaaggataaatcttttgactgcccacagaaattagaacatcctgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatctgcaagttgaaggataaatcttttgactgcccacagaaattagaacatcctgtta 244

                                                      
Query: 301 caaggaatctaaacaattaggaaatttttaaatgggatagata 343
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 243 caaggaatctaaacaattaggaaattttaaaatgggatagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 741
Length adjustment: 9
Effective length of query: 334
Effective length of database: 732
Effective search space:   244488
Effective search space used:   244488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)