BAC Information

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BAC

Clone NameMSMg01-268O19
Chromosome16 (Build37)
Map Location 83,568,211 - 83,568,345
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268O19.T7 (MSMg01no268_o19.b1)MSMg01-268O19.TJ (MSMg01no268_o19.g1)
ACCAG409198AG409199
length740703
length of high quality
(start - end)
321 (46 - 366)251 (73 - 323)
definitionCHROMAT_FILE: MSMg01no268_o19.b1 PHD_FILE: MSMg01no268_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:17 2005CHROMAT_FILE: MSMg01no268_o19.g1 PHD_FILE: MSMg01no268_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTTGGCTGGATTTTATCTTCTTTTATGAAAACAAATCAGGATT
CAATTATAATTTAACCTGTGATACAATGCTATGTAGAACAAGGATCCTGT
CATTTGAACAAAACAGCAGCCTATAGATTGAGAAACGATCTTCTCCAACG
TTACATCTGATGCCAGAGAGCTAATATCCAAAATTTATAAATAACTCAAG
AAGTTAGAAACCTCTGTGCATTTTTTCTAGGGGTGACTGGATTCCCAGAG
TCATGGAATGCCACCTTTAGCCTCCCACATTTTAGATTGCATTTTCCCAC
TCCTTGGGAGGTATCTTTTAGCTCCCCTCCACCCCAATTCCCCACAGCAG
CAGAGCAGGGTAAACACAGTCAATAGCTCTGTATTTTGCCTGCCAAGAAG
CCATCTCACACTCCAGAGACAGAGAAGTGAAACGTGGACCCACCCACAAG
ACACCAACAATCCAAATGACCCAATTAAAAAGTGGGATACAGAGCTAAAC
ACAGAATTCTCAAGAGAGGAGTCTCAAGTAGCTAAGAAACACTTTAAAAA
AAGTTCAATGTCCTTATTCATCTGAGAAATACAAATAAAAACAACTCAAC
AACTCCATCTTACAGCCACAAGACAGGCTAAGATCAAAAATTCAAGTGAT
AGCACATGCTGGGGAGGATATGGAGCAAGAAAACACTCTT
TGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAACTGTACTTGCAAAGGGAAAGCAGC
TCCATGGGGAGGGCTGGGCCCAGCAGGAAACAGGGCAGCAAAAGATAAAA
TGAAGATTTAAAATTGTTACCTCAACAATGCTGGAGGGGAGTATGTGCTA
GTTGCAGGGAGGTTTGGAAGTGCCTAACCAGTGAGCAAGGTAAGGCTTAT
TAAATATAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GATTCATTTGTGAATCTAGAGCTCTTGGTCAGATGCAGTGACCTGAATCC
ACCTACCAAGAGCTTTTTTTTTTTACTCCCCCCCCCCCCACAAAAGCAAC
TATTTATCATCATCATCATCATCCNCCATAATAATAAAAATTATCCCTTA
GTCCTTAGTATTATTAACCCTCCCAGGGGAAAAAACTCCAATAATTTTTG
GGCCCAATTCCCATTCCCCCTAATTTTAACAAAATGGCCCCAAGTGGAAA
GGTTCCCAAAAAGTTTAAAAGGGGTTCTCAAGAATCGGGTCTTGGAAAAT
TCCTTCCTTCCTTCCTTTCTTTCCCTCCCAAAAAAAAAAAAAAANNNNNN
TTTATTTTTTTTTCCTTCCCTTCCGGAGAACAGAAAGAACCCCCCCCCCT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_o19.b1 MSMg01no268_o19.b1 CHROMAT_FILE:
MSMg01no268_o19.b1 PHD_FILE: MSMg01no268_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:17 2005
         (321 letters)



>mm_chr16_83567825_83568545
          Length = 721

 Score =  253 bits (131), Expect = 8e-72
 Identities = 134/135 (99%)
 Strand = Plus / Plus

                                                                       
Query: 187 aatttataaataactcaagaagttagaaacctctgtgcattttttctaggggtgactgga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 387 aatttataaataactcaagaagttagaaacctctgtgcattttttctagaggtgactgga 446

                                                                       
Query: 247 ttcccagagtcatggaatgccacctttagcctcccacattttagattgcattttcccact 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcccagagtcatggaatgccacctttagcctcccacattttagattgcattttcccact 506

                          
Query: 307 ccttgggaggtatct 321
           |||||||||||||||
Sbjct: 507 ccttgggaggtatct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)