BAC Information

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BAC

Clone NameMSMg01-269F14
Chromosome16 (Build37)
Map Location 41,940,191 - 41,940,480
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269F14.T7 (MSMg01no269_f14.b1)MSMg01-269F14.TJ (MSMg01no269_f14.g1)
ACCAG409488AG409489
length731725
length of high quality
(start - end)
318 (42 - 359)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no269_f14.b1 PHD_FILE: MSMg01no269_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:47 2005CHROMAT_FILE: MSMg01no269_f14.g1 PHD_FILE: MSMg01no269_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATAAATGCTTCCAAACCACTTCTGGGTTAGAAAGGAGCAGGATGTATA
ATATAAGGAAAAATATAAGATAAGAAGATGTTGGATTCTGTCTTAGAGTT
TTATTATTGTGAACAGATACCATGAACAAGACAACACTTATAAGGACAAT
ATTTAATTGGGGCTGGCTTACAGTTTCAGAGGTCTAGTACATTATCATCA
AGGCAGGAACATGACAACATCCAGGCAGGCATAATAAAGGGGGAGCTAAG
AGCTCTACAGCTTCATCTGAAGGCTGCTAGCAGAATACTCCCTTCCAAGC
AGCTAGGATATGGGTCTTACAGCCCACATCCACAGTGACACATCTACTTC
AACAAGGCCACACCTACTTCAACAGAGCCAACATATTTTAAATGTGCCAC
TCCTTGGGCCAAGAATATACAAACCATCACAGATTCCTCCATATTTACCA
CACTCTCAGACTGGCTTGATGGTCCAGGTACAAATTCTCAACAACTCAAA
TGTATTGAAGAAGTTGAAGTCTACATTGGCTGCAAAGTAAGTTTCATAGC
TTACATGAGAAACTAAGGGGTACCTTGTCTCANAATAAGAAAGACATAAA
AAAGAGCCTTATGGAACAGCTCAAAGGTAGATTATTTGCCTGGCATACAT
GGAAGTCTAGGTTTAATCTCGTTACTGCAAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGAGAGGTAAATAAGGTTGTGAAGGATTTG
GGAGTAAGGAGAACATCACAAAACAAAGCATGGAACTGATACATTTGACT
TAAAATTTCTCCTGTGAGTCTTTTCTGGGCTGAGCAAATCAATGACTATT
CAAGAATAAAACAGGACATAAAGAAGTTGAAAATGGCAAGAAATAACAAT
ATTAATCATTAACAATAACACCGGGCTAGTTGACATCACATTAAACTGTT
TACAAACCAGCAGTGTCTTTGCCTTCTTTGGTCCCTACCATAACTCTGTT
GTTAAAGACTACCTTGTGCCATTCATTGGGCAACTGAGGCTCTGGACCAA
TGCCAGAAAGCTAAAAAGCAAATTGATTACGTTGATAATGGGTTCAACTG
ATTGTTTTGGGAAGACTTATGGAGAGTGTTGCTATTTCAAACTCCATTAT
CACCGACATGTAGAATGCTACCTTATGGACTAAACTAAACAGTAGCCCAG
AAGCTCACCAGGGATCAGAAAGCCTGGGTATATGGGCAGTTATTTTAAGC
ACAGAGTTCGAAAGGGCAACAATTGTGGAGAGCCTCTGGGAACTTGGTTT
ACTAAAGTTCATTTTCCCTTTTCTATGCTCTGTTCAGTTTCAATATTATA
CAGTAAAGAATTTGGTATTTGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_f14.g1 MSMg01no269_f14.g1 CHROMAT_FILE:
MSMg01no269_f14.g1 PHD_FILE: MSMg01no269_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:48 2005
         (290 letters)



>mm_chr16_41939991_41940680
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagaggtaaataaggttgtgaaggatttgggagtaaggagaacatcacaaaacaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagagaggtaaataaggttgtgaaggatttgggagtaaggagaacatcacaaaacaaagc 431

                                                                       
Query: 61  atggaactgatacatttgacttaaaatttctcctgtgagtcttttctgggctgagcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 atggaactgatacatttgacttaaaatttctcctgtgagtcttttctgggccgagcaaat 371

                                                                       
Query: 121 caatgactattcaagaataaaacaggacataaagaagttgaaaatggcaagaaataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caatgactattcaagaataaaacaggacataaagaagttgaaaatggcaagaaataacaa 311

                                                                       
Query: 181 tattaatcattaacaataacaccgggctagttgacatcacattaaactgtttacaaacca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 tattaatcattaacaataacactgggctagttgacatcacattaaactgtttacaaacca 251

                                                             
Query: 241 gcagtgtctttgccttctttggtccctaccataactctgttgttaaagac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcagtgtctttgccttctttggtccctaccataactctgttgttaaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)