BAC Information

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BAC

Clone NameMSMg01-269K04
Chromosome16 (Build37)
Map Location 74,532,742 - 74,533,040
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269K04.T7 (MSMg01no269_k04.b1)MSMg01-269K04.TJ (MSMg01no269_k04.g1)
ACCAG409700AG409701
length833747
length of high quality
(start - end)		---298 (69 - 366)
definitionCHROMAT_FILE: MSMg01no269_k04.b1 PHD_FILE: MSMg01no269_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:08 2005CHROMAT_FILE: MSMg01no269_k04.g1 PHD_FILE: MSMg01no269_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCCGAATTCTT
CCTATACTTGCTTTTGTTAGTTAGTAGTTGTTGCTGCTGGTGCTGCTGCT
ACTGGTGGTGATGGTGCTCCCCCTACTAGTGGTAATAATAATAGATAGGT
AGTAAAANNAAAAAAAAAAANAAAAAACAAAAAAAAATNAAAAAAAAAAA
TAAAANANAAAATAAAAAAAAAAAAAAAAAAAAAAACCAATAAAAAAAAA
ACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAATTCCAAAAAAAAAAACAACAAAAAAAAAACACACAACACCCC
AAAAAAAAAAAAAAAAAAAAATTTTTAATCCCCCCAAACAAACCCCCANA
AAAAAAATAAAAAAAAAAAAAATTCCCCCCCCCCCCAAAAAAAAAAAAAA
AAAAAATCTCCCCCCCCCCCCCCCCCCCCTCCCCAAAACAAACCTACACC
ACAAAAAACAACACCACCCCAACACCTAAACCCAACAACCCCCCAACCAA
AAACAACAACACCAAAAAAACAACAAAAAAAACACACCCCAAAACAAACA
ACACAAACAAACAAAAACCCAAAAAACCCCCCAAACCACACCCACAACCA
CACACACAAACAATAACACAATCACCCAAACACCACACACAAACCATCAA
CACCACCCACCACCCAACCACAACCCACACAAACCCACCCACCACACCAC
CCCATCCCCACCAACCAACAAACATTCCCCATCCCCAACAATACCACTAC
TCAACCAAAAACACCCCCAAAAAAACACACAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTATCTCATGAGAGACTCCAAAAATGGAAA
GTAGAAAACAGGTATTAAAAGCAAAAGGAAAAAGAACAGGAAATAGAGGC
AGAAAAACAACTAAAGTCATTTCTACATAATAGATAAATTTCAACTGGAA
ATTAAAAATTTACTTTTAATGGAAATCTAATTCCTCCTAAGAGCCTCACT
TTGGAAAGTATTTTTACAAATGACTAAAAATACAAGCATCACAGTTATTC
AATGCCAATACAACTTAGTTTGGTTTAGGCAGAATTAAAAGAAAAAAATC
TGATGTTTTTCTCAGCTTTATTAGTGGCATTGAGGCAAAATTGTCAAGAG
AAAATATGAATAGAATGAAATGAAGGTGTCTTGTCCAGTAGTGCATACTC
TGCAACCCAGAGGAAGTACCTGTGTAGTACTAATATATCTAAGCAAGACT
GAAATCAACTTGTTTGAATATTAGTTGGGAAGCATTTGAGAATGCCAACA
TCACTCAATTAAAAACTACAATACTAAAATTACACAATATTTTATTCTTG
TCTTTTTTTTCATGTGACACCATAAACAGAGAAAATGTGGGAAACAGGTC
TGTTTTTCAAGATCAATGTATGTTAATCATTAATGCAAGGAANAATGAGA
TTTTACTAAGAATTGGATATCATTTTATCTGCCAAGGAAGGAAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_k04.g1 MSMg01no269_k04.g1 CHROMAT_FILE:
MSMg01no269_k04.g1 PHD_FILE: MSMg01no269_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:08 2005
         (298 letters)



>mm_chr16_74532542_74533240
          Length = 699

 Score =  495 bits (256), Expect = e-144
 Identities = 289/300 (96%), Gaps = 3/300 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatctcatgagagactccaaaaatggaaagtagaaaacaggtattaaaagcaaaagg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 201 atttatctcatgagagactccaaaaatggaaagtaggaaacaggtattaaaaggaaaagg 260

                                                                       
Query: 61  -aaaaagaacaggaaatagaggcagaaaaacaactaaagtcatttctacataatagataa 119
            ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aaaaaagaacagaaaatagaggcagaaaaacaactaaagtcatttctacatgatagataa 320

                                                                       
Query: 120 atttcaactggaaattaaaaatt-tacttttaatggaaatctaattcctcctaagagcct 178
           |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct: 321 atttcaactggaaattaaaa-ttctacttttaatagaaatctaattcctcctaagagcct 379

                                                                       
Query: 179 cactttggaaagtatttttacaaatgactaaaaatacaagcatcacagttattcaatgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cactttggaaagtatttttacaaatgactaaaaatacaagcatcacagttattcaatgcc 439

                                                                       
Query: 239 aatacaacttagtttggtttaggcagaattaaaagaaaaaaatctgatgtttttctcagc 298
           ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 440 aatacaacttagtttggcttaggcagaattaaaagaaaaaaatttgatgtttctctcagc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 699
Length adjustment: 9
Effective length of query: 289
Effective length of database: 690
Effective search space:   199410
Effective search space used:   199410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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