Query= MSMg01no270_i06.b1 MSMg01no270_i06.b1 CHROMAT_FILE:
MSMg01no270_i06.b1 PHD_FILE: MSMg01no270_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:11 2005
(322 letters)
>mm_chr16_93049006_93049727
Length = 722
Score = 572 bits (296), Expect = e-168
Identities = 314/320 (98%), Gaps = 2/320 (0%)
Strand = Plus / Plus
Query: 4 ggaattcccttcttcatctccgaaatgacagatttgcacttttcacacttgagctgcagg 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccttcttcatctccgaaatgacggatttgcacttttcacacttgagctgcagg 263
Query: 64 agtgtacaaagtttacactgaactaaagccttctttatgtttcccacttctgactccctc 123
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 agtgtacaaagtttacactgaactaaagccttctttgtgtttcccacttctgactccctc 323
Query: 124 aagcgtacagctgcaccgtcttttcaaatcctcga-tagactgctaatttaaagagaagg 182
|| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 324 aaacatacagctgcaccgtcttttcaaatcctc-actagactgctaatttaaagagaagg 382
Query: 183 aattaaagaatctagctctgtccacatctccagagatctgttttataataaaattctttg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aattaaagaatctagctctgtccacatctccagagatctgttttataataaaattctttg 442
Query: 243 ataacgttatattcctaaagataaagtaaatgtaaccttttaccttattttgctcaatta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataacgttatattcctaaagataaagtaaatgtaaccttttaccttattttgctcaatta 502
Query: 303 gattgttcagaaaaccatag 322
||||||||||||||||||||
Sbjct: 503 gattgttcagaaaaccatag 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_i06.g1 MSMg01no270_i06.g1 CHROMAT_FILE:
MSMg01no270_i06.g1 PHD_FILE: MSMg01no270_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:11 2005
(669 letters)
>mm_chr16_93168615_93169683
Length = 1069
Score = 1048 bits (542), Expect = 0.0
Identities = 563/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 5 tgttcctgcttgacaacagacaggtatactgtgtttaattttgctctgcccagaccggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 570 tgttcctgcttgacaacagacaggtatactgtgtttaattttgctctgcccagactggct 511
Query: 65 cctttttcgaaagaagtttgtggaagtttgtgtctgctgtgagcctgatgacatccaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cctttttcgaaagaagtttgtggaagtttgtgtctgctgtgagcctgatgacatccaact 451
Query: 125 ggccctgcttcgtgatgaatttccaagccttcattttgtagggggttgcaggggcatcac 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 450 ggccctgcttcgtgatgaatttccaagccttaattttgtagggggttgcaggggcatcac 391
Query: 185 ctggtttctttaggctgtcttccgtgggagtggggagaataaacaggcaggaaaggatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctggtttctttaggctgtcttccgtgggagtggggagaataaacaggcaggaaaggatgg 331
Query: 245 actgtttgagggagaagaggagggtggggaaaaaagaagagattaaaaagaaaaagatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 actgtttgagggagaagaggagggtggggaaaaaagaagagattaaaaagaaaaagatta 271
Query: 305 cataaggaaagaagtcatatttggtgggacacatgtgtaagggaggggagagcattgcgg 364
||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 270 cataaggaaagaagtcacgtttggtgggacacatgtataagggaggggagagcgttgcgg 211
Query: 365 ttaccatgggttcaaggccagtatgacctacagactaaattcaagattcaaaccaaacct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttaccatgggttcaaggccagtatgacctacagactaaattcaagattcaaaccaaacct 151
Query: 425 gagttgctctgagagacagtgtctcgaaaaggaaggggagggagagaaaatggggacagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gagttgctctgagagacagtgtctcgaaaaggaaggggagggagagaaaatggggacagt 91
Query: 485 gtaattctagagggctctacgtgggttttctgtcatctacgctgagtgtgatatctatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gtaattctagagggctctacgtgggttttctgtcatctacgctgagtgtgatatctatca 31
Query: 545 gaga-cccccgctcaacccattctctttcc 573
|||| |||||||||||||||||||||||||
Sbjct: 30 gagaccccccgctcaacccattctctttcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
