BAC Information

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BAC

Clone NameMSMg01-270I08
Chromosome16 (Build37)
Map Location 90,548,663 - 90,548,977
singlet/doubletsinglet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270I08.T7 (MSMg01no270_i08.b1)MSMg01-270I08.TJ (MSMg01no270_i08.g1)
ACCAG410333AG410334
length733741
length of high quality
(start - end)
319 (41 - 359)367 (375 - 741)
definitionCHROMAT_FILE: MSMg01no270_i08.b1 PHD_FILE: MSMg01no270_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:11 2005CHROMAT_FILE: MSMg01no270_i08.g1 PHD_FILE: MSMg01no270_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACGTGGGGTTTCCCCCATTTCCCTGGGAAATGGATGTGGCTGGAGTCAAT
CAAGCTAGCAGATATCTAATTAAAGCTTGCTTCAAATTTGACTTTAAATT
GTGGTAGTGGTCTTATTCTCCACCAGTGGGACTAACAGCATCTGCAAAAT
GCCTTCGTAAGAGGACTTGATTGAATTTGATTAAGTAACTGGGTATCTAG
GCTTGTCACGTTGGCATGTAAAACTAACCATCACACGATCTCTAACCACT
TAATGTACCTCTTCCTTCTTAATGAGCAGACACACGGGGAGAGAAATATC
TCACAGTGAGTCAGTTTGTACCCACCCCGCCCACACCTTGCTTCAATGGA
AAATCGAAAACCACGAGGCTCACATTCTAGAAGCTGGCCGGACTATCCCT
TCAGCTACGCAAGGCCTAGGATCACCTTAGCAGTTGGTATCACTGGGTGA
AAACTGATGGCCTTGCCTAATCCTGAGGGTTTTCTGTCTCCCCTTGTTTC
CCGGCAACCCTGAGCCTTGCTTCCATAATGAGCCCGTTAATTAAGACGGA
TGTTTATAAGTATCANAGCACAGGAAATCAGAGCCTTAATGACTGACTCC
AATCAAGTAAATTTCCTAGGTATGCTGCCTTACTGAGAATCTTANAAAGA
ATCAAGCAGAAGGGGGGGGGTGCGCTTGAGGAC
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAATTTTTGAAAATTAATTTTATTGAGC
TGCGCGGGTGTTTTGCCTGCATGTGTGTCTGTGCACCGTATGCATGCCCG
GTGCTGCAGGGGGCAGAAGTGGGTGTCAGATCCCTGGGGATGACGTTATG
ACAGTTATGAGTCAACACGTAAGTGCTGGGAATCGAACCCATGACCTCCG
GAAGACCAGCCCTAGCTCTTAACCACAAAGTCATCTATCTAGCCCTGTAA
GTCTTAACCTTGTAAGGGGCTATTCTGTCTGCTACAGTTTGACCATGGCT
TATTGTTTTCCCCAGAGACTCACGTGATTGAATCTTGGCCTCTAATGTCC
CACTGTGAACATAGTGGTAGCTGTAAAAGATGGTGTCCCATGGGAGGTAG
TTAGTGGGCTGGCTACTTTTATGTTAACTTGACACAAACTAGAGTTATCT
GAGAGGAGTGAGCCTCAATTGAGAAAATGCCTCTGTAAGATTGGTCTGCA
GGCAATAGGGGCATTATCTTAATTAGTGATTGATGGGGAGGGTCCAGCTC
GTGGCGAATGAGGATACACTCTCTGGTGGTCCTGGGTTTTATGACTAAGC
AGGCTGAACAAGCCTTGGTGAACAAGCACTCTCCTTTGGCCTCTGTACCA
GCTCCTGCCTCCAGGTTCCTGCCCTGTTCCAGTTCCTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_i08.b1 MSMg01no270_i08.b1 CHROMAT_FILE:
MSMg01no270_i08.b1 PHD_FILE: MSMg01no270_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:11 2005
         (319 letters)



>mm_chr16_90548636_90549354
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacgtggggtttcccccatttccctgggaaatggatgtggctggagtcaatcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattcacgtggggtttcccccatttccctgggaaatggatgtggctggagtcaatcaag 283

                                                                       
Query: 65  ctagcagatatctaattaaagcttgcttcaaatttgactttaaattgtggtagtggtctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctagcagatatctaattaaagcttgcttcaaatttgactttaaattgtggtagtggtctt 223

                                                                       
Query: 125 attctccaccagtgggactaacagcatctgcaaaatgccttcgtaagaggacttgattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 attctccaccagtgggactaacagcatctgcaaaatgccttcgtaagaggacttgattga 163

                                                                       
Query: 185 atttgattaagtaactgggtatctaggcttgtcacgttggcatgtaaaactaaccatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 atttgattaagtaactgggtatctaggcttgtcacgttggcatgtaaaactaaccatcac 103

                                                                       
Query: 245 acgatctctaaccacttaatgtacctcttccttcttaatgagcagacacacggggagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 102 acgatctctaaccacttaatgtacctcttccttcttaatgagcagacgcacggggagaga 43

                          
Query: 305 aatatctcacagtga 319
           |||||||||||||||
Sbjct: 42  aatatctcacagtga 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)