BAC Information

Click to search

BAC

Clone NameMSMg01-270M09
Chromosome16 (Build37)
Map Location 39,751,325 - 39,751,648
singlet/doubletsinglet
Overlap genenone
Upstream geneB4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270M09.T7 (MSMg01no270_m09.b1)MSMg01-270M09.TJ (MSMg01no270_m09.g1)
ACCAG410513AG410514
length733741
length of high quality
(start - end)		328 (40 - 367)362 (376 - 737)
definitionCHROMAT_FILE: MSMg01no270_m09.b1 PHD_FILE: MSMg01no270_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:31 2005CHROMAT_FILE: MSMg01no270_m09.g1 PHD_FILE: MSMg01no270_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATGAAGGAACCATTGCAGAATTTTTTTTCCATTTGGTAATCCTTATTT
AGACTGGAAAATTAAAAATAAAACAGCATTAATAAAGCTAAGTCATTTCT
TATTAATGCATGCAGGTTTATATGCAATTTAAAAGATCTGATGGTAGATT
AACTTTGGGGATTTGCTTGAATCTTTAAGGTGCTCTTTATTATTAAATGG
AGTTTCTCTTGCTTATCTAAGGATGGGCTTCAGTTTGCTTTCAAATCTGA
AAATATGAAAGGATCATAAACGTACATTGAGTCAGTGCTACCAAATTCCA
CCAGAGCTAGTCTTAAGAGTACTTTAGGAAGATGTATATTGATTTTTCAG
AACACAAAGATCTTCCCTGAGCAGCTCTTCCCGGCTCCATTATTGGCAGG
ACAGTTTCTACGGAAGGATTCTCTGACACATATTATTTCTGCACTGACAT
ACTTACAGATGGTTCCACTGTAGCTGAACTGCTGAGGTCTCTCTCAGCTT
AATCAAGAATGCTTATTTTACACTTTTAAAAGCATATCANATGTGAAGCA
ATAATAATTAAGCCTCTTATTTTTATGAAGCCTTCAGAGATCTGTGAAAA
AGGCAACATGTAGTACTTTGTAAATGTCAAATCTCTTTACAGAAATGCGA
AGGAAGTATTTCAGGCTGTCATCTGTTCTTCAT

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATAGGC
ATCTCTTTCTTTATTTATGCCTAGTTTTCTTCTATAATCTTGTTGAAGAT
AATTGCTGGCCCTTTAAGTTGAAAGTCTTCATTCTTATCTACTCCTATTA
TCTGTAGGTTTGGTCTTCTCATTGTGTCTTGGATTTCCTGGATGTTTTGA
GTTAAGATCTTTTTGCATTTTGCATTTTCTATGATTGTTGTGTCCATGTT
CCCTATGGAATCATCTGCGCCTGAGAGTCTCTCTTCCATTTCTTGTATTC
TGTTGCTTATTCTGGCATCCACGGCTCCTGAATTCTTTCCTAGGGTTTCT
ATCTCCAGAGTTGTTCCCCTTTGGGTTTTCTTTATTGTTTCTACTTCCAT
TTTTAGATCCTGGATGGTTTTGTTCAATTCCATCACCTGTTTGGTAGTGT
TTTCCTGTAACTCTCTAAGGCATTTTTGTGTTTTCTCTGTAAAGGCTTCT
AGCTGTTTACCTGTGTTTTCCTGTATTTTCCTTCTTAATGTCCTCCATCA
TCATCATAAGAAGTGACTTTAGATCCATGTCTTGCTTTTCTGGTGTGCTG
GTATATCCAGGATTTGCTATGTTGGGAGAGTTTGGTTCTGATGATGCCAA
GTAACCTTGGTTTCTGTTGCTTCTGTTCTTATGCTTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_m09.b1 MSMg01no270_m09.b1 CHROMAT_FILE:
MSMg01no270_m09.b1 PHD_FILE: MSMg01no270_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:31 2005
         (328 letters)



>mm_chr16_39751121_39751848
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatgaaggaaccattgcagaattttttttccatttggtaatccttatttaga 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatgaaggaaccattgcagatttttttttccatttggtaatccttatttaga 264

                                                                       
Query: 65  ctggaaaattaaaaataaaacagcattaataaagctaagtcatttcttattaatgcatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggaaaattaaaaataaaacagcattaataaagctaagtcatttcttattaatgcatgc 324

                                                                       
Query: 125 aggtttatatgcaatttaaaagatctgatggtagattaactttggggatttgcttgaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtttatatgcaatttaaaagatctgatggtagattaactttggggatttgcttgaatc 384

                                                                       
Query: 185 tttaaggtgctctttattattaaatggagtttctcttgcttatctaaggatgggcttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaaggtgctctttattattaaatggagtttctcttgcttatctaaggatgggcttcag 444

                                                                       
Query: 245 tttgctttcaaatctgaaaatatgaaaggatcataaacgtacattgagtcagtgctacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgctttcaaatctgaaaatatgaaaggatcataaacgtacattgagtcagtgctacca 504

                                   
Query: 305 aattccaccagagctagtcttaag 328
           ||||||||||||||||||||||||
Sbjct: 505 aattccaccagagctagtcttaag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |