Query= MSMg01no270_n17.b1 MSMg01no270_n17.b1 CHROMAT_FILE:
MSMg01no270_n17.b1 PHD_FILE: MSMg01no270_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:37 2005
(675 letters)
>mm_chr16_42632529_42633603
Length = 1075
Score = 1160 bits (600), Expect = 0.0
Identities = 654/676 (96%), Gaps = 10/676 (1%)
Strand = Plus / Minus
Query: 5 gaattcatagtgactcatttgaatgctgtatcattacctcatttcgttcattgcttgttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 875 gaattcatagtgactcatttgaatgctgtatcattacctcatttcgttcattgctcgttt 816
Query: 65 aatcaggtgcttctataggatggcagtctctagaatgtaaaaaagcacatggctagagca 124
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aatcaggtgcttctacgggatggcagtctctagaatgtaaaaaagcacatggctagagca 756
Query: 125 ggaagtgggaaaacaggtgcactgtgctaagctctgccaaccataaagcaaaaag-aaaa 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 755 ggaagtgggaaaacaggtgcactgtgctaagctctg-caaccataaagcaaaaagaaaaa 697
Query: 184 aaataaaaaacctccagtcaggtttctgggtagcactaagc----cctaccatgacctgg 239
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 696 aaataaaaaacctccagtcaggtttctgggtagcactgagccctacctaccatgacctgg 637
Query: 240 ggatagctactgccccttcctcagagagttaatcccttgctttcattctcagtatatata 299
||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct: 636 ggatagctactgccctttcctcagagag----tcccttgctttcattctctgtatatata 581
Query: 300 aagcaataaccatgccaatactctcttcccctcacgcctttaagacagtcttgcttgtga 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 580 aagcaataaccatgccaatactctcttcccctcaggcctttaagacagtcttgcttgtga 521
Query: 360 tcccagctttctgcttgctttagacctctctcttcctactctctgagaagagcactgaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcccagctttctgcttgctttagacctctctcttcctactctctgagaagagcactgaaa 461
Query: 420 tttccttttttaattaaaaagagaagaaaccttttcttccaccattgcccactcctctca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttccttttttaattaaaaagagaagaaaccttttcttccaccattgcccactcctctca 401
Query: 480 ctgattacaaattgttggaagtggtgcatccttgcccaagaaaagtcagtagactcttgt 539
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 400 ctgattacaaattgttggaagtggtgcatctttgcccaagaaaagtctgtagactcttgt 341
Query: 540 gcagcaatttgcaccggctgaaagattccctctgagagggaggacacaggatcacaagcc 599
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 gcagcaatttgcactggctgaaagattccctctgggagggaggacacaggatcacaagcc 281
Query: 600 tgggggaagttaactaatgtcaggagtcttgaaagagcagcacaaggctccttgctggta 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgagggaagttaactaatgtcaggagtcttgaaagagcagcacaaggctccttgctggta 221
Query: 660 ccagccaggttagagg 675
||||||||||||||||
Sbjct: 220 ccagccaggttagagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n17.g1 MSMg01no270_n17.g1 CHROMAT_FILE:
MSMg01no270_n17.g1 PHD_FILE: MSMg01no270_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:37 2005
(682 letters)
>mm_chr16_42484996_42486073
Length = 1078
Score = 1210 bits (626), Expect = 0.0
Identities = 664/680 (97%), Gaps = 8/680 (1%)
Strand = Plus / Plus
Query: 1 tcccaatatggcaactagctgttacacctaaacaaatcaaatattgtatcattttcagac 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 tcccaatatggcaactagctgttacacctaaacaaatcaaatagtgtataattttcagac 260
Query: 61 atttttgttgactcgctttgacaaaacagactctcctggagactct--cagctaacagcc 118
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 atttttgttgactcgcttggacaaaacagactctcctggagactctgtcagctaacagcc 320
Query: 119 gactcattggtatttcataaggtgtttgtcttcggtctttctagctttgaaggtaaatat 178
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 321 gactcattggtatttcataaggtgtttgtcttcggtctttctatccttgaaggtaaatat 380
Query: 179 tagtatagagagctgaaaacttatttatcccaataataaagccagtgtcttaatttctat 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatagagagctgaaa-cttatttatcccaataataaagccagtgtcttaatttctat 439
Query: 239 tggatgtgtttaaaaggcagcaggtcatctactccactgtactgcacagagtgggcacag 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggatgtgtttgaaaggcagcaggtcatctactccactgtactgcacagagtgggcacag 499
Query: 299 accatccgtccatctcagacaactaaaatcaactagaaatagatagattaaagcacctat 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 accatccgtccatctcagacaactaaaatcgactagaaatagatagattaaagcacctat 559
Query: 359 taacacacaccagcaacctaaggtccaactctagtaaagtactctgttgactcagtgaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacacacaccagcaacctaaggtccaactctagtaaagtactctgttgactcagtgaaa 619
Query: 419 attggccccactggttttgttccatattgtggatcatcatatgaatatgtcagattagtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attggccccactggttttgttccatattgtggatcatcatatgaatatgtcagattagtt 679
Query: 479 acttgtgaagcaaatattacatcttaagagcactcatttgggacagtggcttttaactta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acttgtgaagcaaatattacatcttaagagcactcatttgggacagtggcttttaactta 739
Query: 539 aagaatcttttcatgaagcattatggattttgtttgtttgtttatttttttctgttcctg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 740 aagaatcttttcatgaagcattatggattttgtttgtttgtttatttttttctgtttctg 799
Query: 599 ttctttatctacattggagtcttctacttcaattagcacatggaagaaaacagatctatt 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 t-----atctacattggagtcttctacttcaattagcacatggaagaaaacagatctatt 854
Query: 659 ttgaattaagatctgaaatg 678
||||||||||||||||||||
Sbjct: 855 ttgaattaagatctgaaatg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1078
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1068
Effective search space: 717696
Effective search space used: 717696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
