Query= MSMg01no272_b20.b1 MSMg01no272_b20.b1 CHROMAT_FILE:
MSMg01no272_b20.b1 PHD_FILE: MSMg01no272_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:10 2005
(682 letters)
>mm_chr16_11117146_11118220
Length = 1075
Score = 1228 bits (635), Expect = 0.0
Identities = 667/681 (97%), Gaps = 7/681 (1%)
Strand = Plus / Plus
Query: 1 tactcagcatgtacagacagattccttttacatgaagctgtgaaataatgaacactggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactcagcatgtacagacagattccttttacatgaagctgtgaaataatgaacactggcc 260
Query: 61 agttgaccctttttctattaaaaagtaattactaatattcccaaaggtactcagacaaag 120
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agttgaccctttgcctattaaaaagtaattactaatattcctaaaggtactcagacaaag 320
Query: 121 gatcactaactaagtgaacctgacacctgcttcaagtgttattaccacagaacaaaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcactaactaagtgaacctgacacctgcttcaagtgttattaccacagaacaaaatgg 380
Query: 181 caaggataaagccaggaggtgtataaacgatcctccttctcgtcccttttggctatgctt 240
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 381 caaggataaagccaggaggtgtataaacgatcctcctcctggtcccttttggctatgctt 440
Query: 241 gggatgcacaggaatctggtccagctatgaaacagtaacacggggatcctcttaaactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgcacaggaatctggtccagctatgaaacagtaacacggggatcctcttaaactaa 500
Query: 301 tcagattttcacctggctgcttcagtatcctcacagactcatcaaaagtctctctagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagattttcacctggctgcttcagtatcctcacagactcatcaaaagtctctctagtct 560
Query: 361 ctctcaatggcctacaatgtacacaaatgttactgaatgacagggggcagggacatgtga 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcaatggcctacaatatacacaaatgttactgaatgacagggggcagggacatgtga 620
Query: 421 aattcagcaattctgcaaccattcttttctctacagagattgacattaagtttactgtta 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aattcagcaattctgcaaccattcttttctctacaga------cattaagtttactgtta 674
Query: 481 acagcagcaatgcacagagctcaggaaagaatttcaaacatgctgtactcatgatggtgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 acagcagcaatgcacagagctcaggaaagaatttcaaacatgctgtactcatgatggtgt 734
Query: 541 aacatagttataaaaactcaaacacatgagataaacaagttcttcagtgaacacttgcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 aacatagttataaaaactcaaacacatgagataaacaagttcttcagtgaacact-gcag 793
Query: 601 gatacaacaacaaaggaacagaagcaagcacagcattctacaagcatggctgggagacag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gatacaacaacaaaggaacagaagcaagcacagcattctacaagcatggctgggagacag 853
Query: 661 aaataaggacaccatcaactc 681
|||||||| ||||||||||||
Sbjct: 854 aaataagggcaccatcaactc 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1075
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1065
Effective search space: 715680
Effective search space used: 715680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_b20.g1 MSMg01no272_b20.g1 CHROMAT_FILE:
MSMg01no272_b20.g1 PHD_FILE: MSMg01no272_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:10 2005
(285 letters)
>mm_chr16_11176801_11177485
Length = 685
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Minus
Query: 1 caaatttcatgcagtggctcatcctctttgagctttctacacacacactttgtcttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caaatttcatgcagtggctcatcctctttgagctttctacacacacactttgtcttccct 426
Query: 61 gtccctcagcaacttaggctcaggatctttcccactgcctggaagcactctcccttctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtccctcagcaacttaggctcaggatctttcccactgcctggaagcactctcccttctac 366
Query: 121 tgccctgacttggagcacttttcacatctccagtcgcagggactcagccttacattgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgccctgacttggagcacttttcacatctccagtcgcagggactcagccttacattgttc 306
Query: 181 tgtctggggtagtgtacacctgaccactgaaacaccggtgaatacagcgacatataagtt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtctggggtaatgtacacctgaccactgaaacaccggtgaatacagcgacatataagtt 246
Query: 241 gagatgaaggccagggagaacaagagcttgtgttggctctgagat 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagatgaaggccagggagaacaagagcttgtgttggctctgagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
