BAC Information

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BAC

Clone NameMSMg01-274D09
Chromosome16 (Build37)
Map Location 37,625,551 - 37,626,034
singlet/doubletsinglet
Overlap geneHgd
Upstream geneCd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3
Downstream geneNdufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D09.T7 (MSMg01no274_d09.b1)MSMg01-274D09.TJ (MSMg01no274_d09.g1)
ACCAG413008AG413009
length743764
length of high quality
(start - end)
483 (120 - 602)234 (120 - 353)
definitionCHROMAT_FILE: MSMg01no274_d09.b1 PHD_FILE: MSMg01no274_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005CHROMAT_FILE: MSMg01no274_d09.g1 PHD_FILE: MSMg01no274_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CAGTATTCCCTGCAAGTAGAAACTTCTCTGAATGAGGTAGAAAGTAGCTT
CTGTCTAAGAATTGACGCTAGGTGTTTAGAAGGAAATGCTATATCATGTG
TATGTAGCTAATTATCAGTAGTAACTTGCCTTGCAGGGCCTTTGACCTCC
CAAGGATTAGAATTTTAAAACCAAGAGTAAGATCATGTCACAGGCCTTAA
ATCTAGGGAGCAGTTGGTTACCCTGTGATAGTCACGCCACTACTGCACAT
GTAGGCATATCTTGCTGACAGGTTGATGTTGCAGAGTTGGTAGAATTGGT
GGAATTCTCTTATGGGTAAGACCATTCGATGGCTTTTCTCAGCCAAACAG
CACATCACAGAAGGTAGTGTGAACAAATCAGGTTTTATTTTATTTGTATT
ATTATGATTAATGATTGTTGGCTAGTTTCTAAGATCCTTTTATAAGTTTT
TTTAAGGTATTAATTCATTCAGGTCTTAGAGCAGCAGCAAGAGGGAGCTA
ATATCAATTGTCTCTCTTTCTGTTTCCCAGAAGATGAGACTGGCACCGGG
AGATAGCAGGTCTCCAGGTCTCACAGATAAGTTAAGTGCACGGTCATGAT
TTAATTGCAGATTGTCTGATGCCTTATCAGGCACGTGTGACCACTAATTG
ACATGGCCAGTGTCGTGGTCTGTACTTAATACACATCTGGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGGACTAAGGCTGTGATTTATCACAGTGAGG
GGACATAAATTTTATCGCGGAAAGGAAAAGGCGCGAGGGACAAAGGACAG
GAAACTGGGTGCAAGTGCCTAAGAGTCTTTTCCCCTTTGGGTCCTATGGG
AGGTATTCACTTCTAGTAAGCACAGTGACAAGCTTTCTCAAAGGAGCTGG
TCACTTAGCCACCTCCTATCTGCCACTTGCCAGAAATCCAGATGCCTTGA
AAGACATTAAGTGCTATTATATATTTTGTGTGTGCACAAACAGTTGTGGG
ATGGGTTGGGTANTTGACCACCTCCCCTCCAGTTGGTGATGCTGTTGGGG
GGGGGGGCTTAGAAGGTGTGAACAAAAAAAAGGAAGTGTTTCGGGAGGCG
GTCTTGGAGAGTTAAAAGATTGCCACCATTCCAAGTGCGCCCTCTGTTTC
CTGCTTGTGACCCAAGATGTGTACCATCATCGTCTGTTACCGTGTCTGCT
GCCATTCACCATGTCTCCCTGCCACAGCTTTTCTTACCCCCTTTCCCTCA
CCTCCCTATATCTCCCCATCCTTTTTCCCGCACCCCCCCCCCTTCCTCCC
CTTCCTTCCTTTTCCCCCTTTCACTCCCTTTCCTATTTTTCCCATATCCT
TCACTCTCCCCTTTTTTATCCTCCTCTCCCTTATCTCCCCTTTTCTCTTT
TCCCCTCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d09.b1 MSMg01no274_d09.b1 CHROMAT_FILE:
MSMg01no274_d09.b1 PHD_FILE: MSMg01no274_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:43 2005
         (483 letters)



>mm_chr16_37625351_37626234
          Length = 884

 Score =  913 bits (472), Expect = 0.0
 Identities = 481/484 (99%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtttagaaggaaatgctatatcatgtgtatgtagctaattatcagtagtaacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtttagaaggaaatgctatatcatgtgtatgtagctaattatcagtagtaacttgc 260

                                                                       
Query: 61  cttgcagggcctttgacctcccaaggattagaattttaaaaccaagagtaagatcatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcagggcctttgacctcccaaggattagaattttaaaaccaagagtaagatcatgtc 320

                                                                       
Query: 121 acaggccttaaatctagggagcagttggttaccctgtgatagtcacgccactactgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggccttaaatctagggagcagttggttaccctgtgatagtcacgccactactgcaca 380

                                                                       
Query: 181 tgtaggcatatcttgctgacaggttgatgttgcagagttggtagaattggtggaattctc 240
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tgtacgcatatcttgctgacaggttgatgttgcagagttggtagaattggtggaattcgc 440

                                                                       
Query: 241 ttatgggtaagaccattcgatggcttttctcagccaaacagcacatcacagaaggtagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgggtaagaccattcgatggcttttctcagccaaacagcacatcacagaaggtagtg 500

                                                                       
Query: 301 tgaacaaatcaggttttattttatttgtattattatgattaatgattgttggctagtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacaaatcaggttttattttatttgtattattatgattaatgattgttggctagtttc 560

                                                                       
Query: 361 taagatccttttataagttttttt-aaggtattaattcattcaggtcttagagcagcagc 419
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 taagatccttttataagttttttttaaggtattaattcattcaggtcttagagcagcagc 620

                                                                       
Query: 420 aagagggagctaatatcaattgtctctctttctgtttcccagaagatgagactggcaccg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagggagctaatatcaattgtctctctttctgtttcccagaagatgagactggcaccg 680

               
Query: 480 ggag 483
           ||||
Sbjct: 681 ggag 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)