BAC Information

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BAC

Clone NameMSMg01-274H15
Chromosome16 (Build37)
Map Location 87,684,565 - 87,685,075
singlet/doubletsinglet
Overlap genenone
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
Downstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274H15.T7 (MSMg01no274_h15.b1)MSMg01-274H15.TJ (MSMg01no274_h15.g1)
ACCAG413191AG413192
length742742
length of high quality
(start - end)
504 (63 - 566)232 (121 - 352)
definitionCHROMAT_FILE: MSMg01no274_h15.b1 PHD_FILE: MSMg01no274_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:01 2005CHROMAT_FILE: MSMg01no274_h15.g1 PHD_FILE: MSMg01no274_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
AAGTGTCCAAAATGGCTATTGGTACAGAGAAGGCCTCAATAAAGTCTAAC
CAACTGGGTTGGTACCCCAGGTTTTTAGAGTTTTTGCACTGTGTGTGTGA
AGCTCTGGGTTTGATTCTCAGTCCTGTATAAATCCTGGTGGCACACATCC
GTTATCCTAGCAGCTGATGGATGGCTGAGGTAGAGGAACCCAGCAAACAA
GATCTTGCTATATAGGGATTCGAAGCAGGTCTGGGATGTATGAGACCCTG
TCTCAAAAGAGAGAGAGAGAAAAAAAGTGACTAGTTGCTTTTTTTTTCCC
CCTGCAAAGCATTGAGCATAAATAGGATGTCCCCATAGAGACATTTTGAG
GTGTGGTACAGGGGTATGAGGATGCACCCTGCTCCCCATCCCCCATTAGT
GGTAAAATTACTAATCTTGGGAATGGCTAACTAACTTTGCTTGAGGCCAT
GACTCTCATGGGCTGCTCCTGACCAGTGATGGAATACAGGGGTCTCTCTA
ACAACCCTGTTCACAAGCCGCGGGTGTTCTATTGATTCTGGCTTAGGCTT
GTGGATTTTCTGCTGGCGTTGGTGAAACCTCATTACACTGCTCACTTCTC
ATCTCCTCCTGGATTGCGGTTAGATCTGCCACAAGGTCTTTCTATTTCAT
TTCATATAGAAATTACCTTTGAGCGTCCTCGACTGTGTCACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCACCCCTAAGCCCCTTACTCCATAAAAACCCC
TAGCTTCTGTGTCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCA
AGTCCGACTGGAGCTCCGTCATTAAACGACCTCATGTAATTACATCAAGG
CCTTTTCGTGATTCTTTGGGTGCACGCTGAATTGGGAATTGAGTGGGGGT
TTCCCCACTAGGTTCTATTAACACAACTCTGAAATTACAAGCATGAGACA
GTAAAATGTATTATATCCTGAGGATGCAGAGCCAGGGAGGAAAAACCACA
TTTTATTTATTCTATCCGCTGGCAATACACACCTACATGTAACATTTAAG
CCAGAGTTCTCCATGAAAAGAACCTTTCTGAAAATATATTTAGTACATAA
ATAGGAGCCTACTTATGCATTTGGTGACACATATTACCCTCAAACCCTTT
GATAAATGAGTGCTCTCCTACCTATTAGTTTCTCTCCAGTTATTTGCAGT
TAAATGAGTTTGTCTCACAGATGTATTGGGTTTAGAAAGCAGAGCACAGG
AAAAAGACCTGGATCTTTCTGTCATTTCTCTTTGCTTTTCTAGTANATAG
AATTTCTCTGGGTCCAGGAATACTGGTCCCCTGAAAAGCCCTAATGGGCC
CCCAATGAGCTAATGGCAGGCCTTATCTGTGCATTCCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_h15.b1 MSMg01no274_h15.b1 CHROMAT_FILE:
MSMg01no274_h15.b1 PHD_FILE: MSMg01no274_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:01 2005
         (504 letters)



>mm_chr16_87684369_87685275
          Length = 907

 Score =  868 bits (449), Expect = 0.0
 Identities = 493/511 (96%), Gaps = 7/511 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctattggtacagagaaggcctcaataaagtctaaccaa----ctgggttggtacccc 56
           |||||||||||||||||||||||||||||||||||| ||||    ||||| ||||| |||
Sbjct: 197 tggctattggtacagagaaggcctcaataaagtctagccaatgggctgggatggtagccc 256

                                                                       
Query: 57  aggtttttagagtttttgcactgtgtgtgtgaagctctgggtttgattctcagtcctgta 116
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 257 aggtttttagagtttttgcactgtgtgtgtgaagctctgggcttgattctcagtcctgta 316

                                                                       
Query: 117 taaatcctggtggcacacatccgttatcctagcagctgatggatggctgaggtagaggaa 176
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 317 taaatcctggtggcacacatccgttatcctagcggctgatggatggctgaggtaggggaa 376

                                                                       
Query: 177 cccagcaaacaagatcttgctatatagggattcgaagcaggtctgggatgtatgagaccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccagcaaacaagatcttgctatatagggattcgaagcaggtctgggatgtatgagaccc 436

                                                                       
Query: 237 tgtctcaaaagagagagagagaaaaaaagtgactagttgctttttttttc---cccctgc 293
           |||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||
Sbjct: 437 tgtctcaaaagagagagagaaaaaaaaagtgactagttgctttttttttttttcccctgc 496

                                                                       
Query: 294 aaagcattgagcataaataggatgtccccatagagacattttgaggtgtggtacaggggt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagcattgagcataaataggatgtccccatagagacattttgaggtgtggtacaggggt 556

                                                                       
Query: 354 atgaggatgcaccctgctccccatcccccattagtggtaaaattactaatcttgggaatg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgaggatgcaccctgctccccatcccccattagtggtaaaattactaatcttgggaatg 616

                                                                       
Query: 414 gctaactaactttgcttgaggccatgactctcatgggctgctcctgaccagtgatggaat 473
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 617 gctaagtaactttgcttgaggccatgactctcgtgggctgctcctgaccagtgatggaat 676

                                          
Query: 474 acaggggtctctctaacaaccctgttcacaa 504
           ||||||| |||||||||||||||||||||||
Sbjct: 677 acaggggcctctctaacaaccctgttcacaa 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 907
Length adjustment: 10
Effective length of query: 494
Effective length of database: 897
Effective search space:   443118
Effective search space used:   443118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)