BAC Information

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BAC

Clone NameMSMg01-274M24
Chromosome16 (Build37)
Map Location 32,368,762 - 32,369,046
singlet/doubletsinglet
Overlap geneUbxd7
Upstream gene1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966
Downstream geneTm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274M24.T7 (MSMg01no274_m24.b1)MSMg01-274M24.TJ (MSMg01no274_m24.g1)
ACCAG413436AG413437
length758758
length of high quality
(start - end)
323 (36 - 358)285 (433 - 717)
definitionCHROMAT_FILE: MSMg01no274_m24.b1 PHD_FILE: MSMg01no274_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:25 2005CHROMAT_FILE: MSMg01no274_m24.g1 PHD_FILE: MSMg01no274_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTATATCAGGCTGACTTTAAACTAACAGAGATCACTCTGTCTCTGCCTCT
GTGCCCCTCTGCCCCTCTGTCTTTCTGCTTCTGTCTCTGCTGGAATTATA
AAGGCATGTGCTGCCACTGCCCAGACTGTAGCTGAGGCTTCTAAAACTCA
TGTCAAACACCAGTCAGTTAAAAATAAGGAGGAGGGGCACACACACACAC
ACATACACACACACACACACACACACACACACACACACACACACACACAC
AAACACACACGTATACACGAAAGTGTGTCTGACACACTGCTCTTGGCTAC
TGTCTTTTTTTCTTGCCCCCCCCTGTTGTGAAGGGGGAACGGTATGTGCC
AGGGTTGTTGTGACCAAATGACTGAGATCCCTGTAAAAGTGTAGGTGAAT
TAGTGCTGAAATGAGTGATAGATGGCTAGTGGGACACAGATTTACATTAA
CCACTTTGGACAGTAATATGTAATACTGCCCCCTACTTTGAGACAAAGTC
TTTCTATGTAGTCCTGGTTGCCTGGAACTCACTATGTAGGCCAGGCTAGC
CTCAAACTCACAGAGATCTTCCTATCTTTGCCCCCTAAGTGCTAGGATTA
AACACTTCTGCCTTCACACCGGCATAATATATAGTATCTGTGAATAATAT
ATAATACATATAAATAATATATAGTATCCACAAAACCCGACCTTCTTCTG
TCCTCAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAAAGAAAGGTCAATGTATGTTTATTTGTTCAGG
ATGGTGTACAGGCCATGCATGTGCATTTGTCCTCTAACTGGAGGACAGCT
TATTGGAGTTGGTCTTTCCTACCTGGGGATCAAATTGGCACCATCAATTT
TGGTAGCAAGTGCCCAGACTTACTGAGCCATCATCTAGTGTCTAAGGACA
GTTACTTTATATATGAGAAATGTGTGGACTGTGTTTGGCTTTGTAACTTA
GAGTGAGCTGGTCAGGGTACAGATAGGTCCTGTAACTTTAGGAATGGTTG
AAAGTGTATTGTTTAAGCCGCCCCACCAATCTATGCTCTTTCTTCTAGTA
CATGGTACCAGCAGTGTCCATAACCTCTACTGAGAGTCTTTAAAACTAGG
AGCTAGACACAGAGGATGAGTTAGGATAACTCTGAGAGTTAGAGCAATGG
TTCTGAAATTTTTCTTCTTTTGCTTATGAATATGTGAAAAAATTTGAGTT
GATGTGCTATTAGGGACCAAATCTAAGCAAACACTCTACCACTCCGGTGA
ATCCTCATCTCATAGTGAATTCGTATTTGTTTTTAATGATGCTGGGGACT
AAACACAGGGAGGGTCTCATGTATACTAGATAGGTACTATTAGCTAGATC
CCCAACTAGCTTTTCTTCTTATTGTGAGGTAATCTCAGTAAGTTGGGTGG
AGGTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_m24.g1 MSMg01no274_m24.g1 CHROMAT_FILE:
MSMg01no274_m24.g1 PHD_FILE: MSMg01no274_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:25 2005
         (285 letters)



>mm_chr16_32368562_32369246
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtctttaaaactaggagctagacacagaggatgagttaggataactctgagagttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtctttaaaactaggagctagacacagaggatgagttaggataactctgagagttag 260

                                                                       
Query: 61  agcaatggttctgaaatttttcttcttttgcttatgaatatgtgaaaaaatttgagttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaatggttctgaaatttttcttcttttgcttatgaatatgtgaaaaaatttgagttga 320

                                                                       
Query: 121 tgtgctattagggaccaaatctaagcaaacactctaccactccggtgaatcctcatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctattagggaccaaatctaagcaaacactctaccactccggtgaatcctcatctca 380

                                                                       
Query: 181 tagtgaattcgtatttgtttttaatgatgctggggactaaacacagggagggtctcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgaattcgtatttgtttttaatgatgctggggactaaacacagggagggtctcatgt 440

                                                        
Query: 241 atactagataggtactattagctagatccccaactagcttttctt 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactagataggtactattagctagatccccaactagcttttctt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)