BAC Information

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BAC

Clone NameMSMg01-274N20
Chromosome16 (Build37)
Map Location 24,269,414 - 24,269,698
singlet/doubletsinglet
Overlap genenone
Upstream geneSt6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274N20.T7 (MSMg01no274_n20.b1)MSMg01-274N20.TJ (MSMg01no274_n20.g1)
ACCAG413475AG413476
length731756
length of high quality
(start - end)
318 (43 - 360)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no274_n20.b1 PHD_FILE: MSMg01no274_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:29 2005CHROMAT_FILE: MSMg01no274_n20.g1 PHD_FILE: MSMg01no274_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAAATTATAAAACCTGGGTAAGAATGTTCACCGAGCATGGCAGCACA
TGCCTTTCCCCGAAGCGACCCACTGGAGTTCCAGGACAGCCTGGTGTACA
GAGCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTCATCTCAAAA
ATAACAACAACAAAAAAAGAATCCTATAATCCTATGTTCTCCCAGCAGTT
ACTGAAAGTTTCAAAGCTCACAAACAACTCTTTGGGCTATTTGACATACA
TTACATGAATCACAGGTCTCAAGTTTTATTTCCTTTCATTACCAGTTGCC
TGTACTGTTTTTTGTTGCCCCCCTCCTCCCCTAAAGATGGGACCTGTGAA
ATACTCCAATAGACATTAACAAGAAAAATAACATGCTAGCTTTGGAATCA
TATATGCATTTCCAACAAAAACAGATCCAGCAGGTTGTATATATATGAAT
GTGTATATCTATATAAGTATGAACATATGCATATATATATTGAATTCATA
TATATGAGTACATATATATGAACATGTATATATATATGCATATATATATA
CACACACATATATATGAACATATACAGCAATAGTAAACAAAGCAAAAGAG
ACTATCAACTTGTGAAGGGGGAACATTTGAGGGAGGATAACATAGAGGGA
TGACTGGAGACAGAAAAAGGAGTGAGAAGTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTCCTCAATTTCTACATGGTGTCGTCT
CCTGGCTGTTTCTGGCAGCCAGTAATGAAGAAGCAAGCTATACAATGAGA
GTAAGCTCACATGACCTATGGGCACTAGAATTGCTGTATGGAGAGCAGGA
GAGTTTTGGGAGGCCATCCCACAGCCTAACTCTTTCATGGGGAGGATCAG
AGGACATGTGAGAAATCTGACCAGAGTGAAAGACATCTTGAAGACCATAA
GCCATCTGGACTCTGCCCTTAGCCATCTGAAGACCAGAGGGCTGGTGGGC
CATGTGGATGATTCCCCNAACANAACCTGGTTTGGAAAAACACTGGGTGC
TCTACAGACCGGGGGGAAAAAAAAAAAAATTGNCTGGGGGGGGGGGGGCC
CCTCCTTCCCTCTTCCTCCCCACCCCCTTCTATTCTTCTTTCCCTTCCTA
CATCCTTCACTCATCACTTCCACCTCCTCCTTCCCACCTTCCTGTCCCCT
TTCTTTCCCCTTTCCTTCCTTTTCTCCCCCTTTTTTTTTTTTCCCCCCTT
TTCCCCCCTTCCTTCCATTTCCTTCCCCCCCCTTTTCCTTTCCCCCCCTT
CCCTCCCGCTTTTCACCCCTATCCCCCCCCTTCCCCCCTTTCCCGCCTTT
TCCCTCCCTTTTCCCCCATCCCCTCTTTTCCCGCTTCCCCCCCTTTACTT
TCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_n20.g1 MSMg01no274_n20.g1 CHROMAT_FILE:
MSMg01no274_n20.g1 PHD_FILE: MSMg01no274_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:29 2005
         (285 letters)



>mm_chr16_24269214_24269898
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtcctcaatttctacatggtgtcgtctcctggctgtttctggcagccagtaatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtcctcaatttctacatggtgtcgtctcctggctgtttctggcagccagtaatgaag 260

                                                                       
Query: 61  aagcaagctatacaatgagagtaagctcacatgacctatgggcactagaattgctgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aagcaagctatacaatgagagtaagctcacatgacctatgggcactagaattgctttatg 320

                                                                       
Query: 121 gagagcaggagagttttgggaggccatcccacagcctaactctttcatggggaggatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagcaggagagttttgggaggccatcccacagcctaactctttcatggggaggatcag 380

                                                                       
Query: 181 aggacatgtgagaaatctgaccagagtgaaagacatcttgaagaccataagccatctgga 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacatgtgagaaatctgaccagagtgaaagacatcttgaagaccataagccatctgga 440

                                                        
Query: 241 ctctgcccttagccatctgaagaccagagggctggtgggccatgt 285
           ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ctctgcccttagccatctgaagaccagcgggctggtgggccatgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)