BAC Information

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BAC

Clone NameMSMg01-274O10
Chromosome16 (Build37)
Map Location 7,373,920 - 7,374,223
singlet/doubletsinglet
Overlap geneA2bp1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O10.T7 (MSMg01no274_o10.b1)MSMg01-274O10.TJ (MSMg01no274_o10.g1)
ACCAG413498AG413499
length733736
length of high quality
(start - end)
689 (42 - 730)307 (430 - 736)
definitionCHROMAT_FILE: MSMg01no274_o10.b1 PHD_FILE: MSMg01no274_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:32 2005CHROMAT_FILE: MSMg01no274_o10.g1 PHD_FILE: MSMg01no274_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCATCACCTTACAGACATATGCCACGTGGCCCAGTTTCATTTCTGTTG
CTGTGATAAAACATCCTGACCACACAGCGAGGAGAGGACTTAGTCAGATT
ATAATTCCAGGTTACAGGCTGCCATTGAGGAAGAATCAAGGTAGGAACTC
AAGTAGGTAGTCACATCACATCCCCAGTCAAGAGCAGAAGAAATGAATTC
AGCCGTGCCACCTACTTTTGGCTTTTCTCCCTCTTTTGGCTTCTCTTACA
CAGCTTTAGACGCTGGCCTAGGTTTAGCATTGCCCATAGTGGGCTGGGTC
CTCTTACATCAATTTACTGTAAAGACTAACCCCACAGACCAATCTAATCT
AGGATGTTTCTCAATTGACATTCTCTTCCAGCGCACTGTGATAAGAGCTA
AGATTTGAGGTCTTGGTGGTGGTACACACTTTTTAATACAATACTCTGGA
GGTAGAGGCAGAGAGATCTCCAAGTGTCAGAGGTCAGCTTAGTCTTCATA
ATGAGTTCTAGCTCAGCCAAAAATATCTAGTAAGAAAACCAAACCAAACC
AAACTTAACTGAACTGAACTTAACAGAAACAAAAAAAACAAAACAAAACA
AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAGACAAAACAG
ATGGCTTGTGGATTGTAATTAGTGCGTGTGTAG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTGCCTGAAGGAAAGGACACTGGGT
TATTGGAAACTCAAGTTACTTCTTAATTTCATAGCAAGCGTGAAGCTAGC
CTGTGCTACATTTCATCCTGTCTCAATAAAAAAACAAGGCAAAACAAAAG
AGAATACTAAAACTCAAAAATCCCAAGTAAGAGAAATAACCTCAGGGTAT
TGATCACTTATGCCTGCTTGCCATAGACTGATTTCCTCTCAATGGTGAAG
CCATCAGTAAATATAATAGAGAAAGATGATTACCAAACTGATAGTTGATC
TTTCTTAGTAGTTAACCCGNGCAGACCCATTATAATCAAATTATAATCTT
AAAAATAAAATTCACAAAAATAAATAGAAAGCTTTAAAATGCTACAGTGT
AGGCATCTATAGGCACAGTTACATTCCCATGCTAAATGTCACTTTTGTAG
GCAGCGAAACTCATGAGTTTCTCCATTTGTCCTGTAGACATGTTTCCTAT
GTGTAGAGTTGTTACCCAATCTCATGGCAGACCCTTCTGCCAACCTGAGG
GAAAGGAAAAGATGTGTAATCTGAGCCATACCATTTAAAATTTACTTAGA
AGATAATATACCTTTAGGGGTTCTTTCCATATCTGGACAGACAGCCAGAC
ACACACACACACACACACATACACACTTTATCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o10.g1 MSMg01no274_o10.g1 CHROMAT_FILE:
MSMg01no274_o10.g1 PHD_FILE: MSMg01no274_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:32 2005
         (307 letters)



>mm_chr16_7373720_7374426
          Length = 707

 Score =  580 bits (300), Expect = e-170
 Identities = 304/306 (99%), Gaps = 2/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttaaaatgctacagtgtaggcatctataggcacagttacattcccatgctaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttaaaatgctacagtgtaggcatctataggcacagttacattcccatgctaaatgt 260

                                                                       
Query: 61  cacttttgtaggcagcgaaactcatgagtttctccatttgtcctgtagacatgtttccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttttgtaggcagcgaaactcatgagtttctccatttgtcctgtagacatgtttccta 320

                                                                       
Query: 121 tgtgtagagttgttacccaatctcatggcagacccttctgccaacctgagggaaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtagagttgttacccaatctcatggcagacccttctgccaacctgagggaaaggaaa 380

                                                                       
Query: 181 agatgtgtaatctgagccataccatttaaaatttacttagaagataatatacctttaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtgtaatctgagccataccatttaaaatttacttagaagataatatacctttaggg 440

                                                                       
Query: 241 gttctttccatatctggacagacagccagacacacacacacacacacacatacacacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 441 gttctttccatatctggacagacagccagacacacacacacacacacaca--cacacttt 498

                 
Query: 301 atccag 306
           ||||||
Sbjct: 499 atccag 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)