BAC Information

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BAC

Clone NameMSMg01-275L02
Chromosome16 (Build37)
Map Location 75,478,254 - 75,478,447
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L02.T7 (MSMg01no275_l02.b1)MSMg01-275L02.TJ (MSMg01no275_l02.g1)
ACCAG414071AG414072
length760760
length of high quality
(start - end)
194 (123 - 316)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no275_l02.b1 PHD_FILE: MSMg01no275_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:28 2005CHROMAT_FILE: MSMg01no275_l02.g1 PHD_FILE: MSMg01no275_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGACCGCGGAAT
TCACCCAGTTTCCTAAAAAGGGTCGCCAGTGCTTTAACTACCGAGCCACC
TCTCCAGTCCTTATTTAATCTATTTTAAATGCCAAACAATAGCCACTAAA
TTAGCTCCAGTGAGGATGGTCAGAAGTCTCAAGGAATTTGTGTTGGTGGC
CTTTAAAACTGTATACCAGCCGCTCAGGATTCACAGTAGTGCCCAGGAAT
GCCAATCAAAGTACATATCTTCTCTTACTTTGTTGTAAAGGGGAAGGAAG
CTTGCAACGAATACTTTTTTGTGAATAGTGAGGGGGGAGGGATAAAAATT
TAGAATTTTTTTTATTCTCCCCCCCCGACAATAAGAGTTATTGAAAATTA
AAGTTCAAGAAGGAGAGGAACAAAGAACAAAAAGGACTAGGGAGGCGTAT
GAAATGTATGGCACAAATCATCCTATTTTTACCCACCTAATAATTTCCTA
TTCAACTAAAGTGGTACTGCCCTCTTCCCAAGGACAGGTTGTGGAAGCAA
AAGTCATTGAAACTACTGTGGAGTATCATGAAATGCATTTTAATTCTTGG
GAGTATTAAATAAATAGAGCTGTGTATAATTTGATATCTATAAGAGCATC
AATTATTTGCCTCATATCAAAGTTTTAACATAAACCCTTCCCAATGAGTC
AAATATTTGCCGACTATAATAACCCCCAAAATTAACCATTTGATAATATA
ATAAGCATAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTT
TAATGTGGTTATTTGATTTTCTGGAGTCCAACTTCTTGAGTTCTTTATAT
ATATTGGATGTTAGCCCCCTATTGGATTTAGGATTGGTAAATATCTTTTC
CCAATGTTGGTTGCTTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAG
AAGTTTTGCAATTTTATGTGGTCCCATTTGTCAATTCTTGATTTTGCAGA
ACACGCCATTGCTGTTCTGTTCAGGAATTTTCCCCCTGTGCCCATATCTT
CGAGGCTCTTTTTACTTTCTCCTCTGCAAGTTTTAATGTCTCTGGTTTCA
TGTGGAGGTCTCTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAG
AATGAATTAATGCACATTCTTCTACATTCTAACTGACAGTTGAGCCAGCC
CCATTTGTTGAAAATGCTGTCTTCTTTCCACTGGATGGATCAAGTGACCA
CAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTGTATTTCATTGTTCTCC
CTTACTGTTACTGTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGAACAGTGTAATGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTG
TTGAGAATATTTTTTGCTATCTTATTTTTTTTTCATTCCAAATGAACTTG
CCAATTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l02.b1 MSMg01no275_l02.b1 CHROMAT_FILE:
MSMg01no275_l02.b1 PHD_FILE: MSMg01no275_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:28 2005
         (194 letters)



>mm_chr16_75478054_75478647
          Length = 594

 Score =  337 bits (174), Expect = 4e-97
 Identities = 189/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaaatgccaaacaatagccactaaattagctccagtgaggatggtcagaagtctcaa 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 201 ttttaaatgccaaacaatagccactaaattacctccagtgaggatgatcagaagtctcaa 260

                                                                       
Query: 61  ggaatttgtgttggtggcctttaaaactgtataccagccgctcaggattcacagtagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggaatttgtgttggtggcctttaaaactgtataccagccgctcaggattcacagtggtgc 320

                                                                       
Query: 121 ccaggaatgccaatcaaagtacatatcttctcttactttgttgtaaaggggaaggaagct 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccaggaatgccaatcaaagtacatatcttcttttactttgttgtaaaggggaaggaagct 380

                         
Query: 181 tgcaacgaatactt 194
           ||||||||| ||||
Sbjct: 381 tgcaacgaagactt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)