BAC Information

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BAC

Clone NameMSMg01-276D18
Chromosome16 (Build37)
Map Location 35,241,074 - 35,390,317
singlet/doubletdoublet
Overlap geneAdcy5, Sec22a
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb
Downstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D18.T7 (MSMg01no276_d18.b1)MSMg01-276D18.TJ (MSMg01no276_d18.g1)
ACCAG414475AG414476
length733740
length of high quality
(start - end)		290 (434 - 723)316 (389 - 704)
definitionCHROMAT_FILE: MSMg01no276_d18.b1 PHD_FILE: MSMg01no276_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:08 2005CHROMAT_FILE: MSMg01no276_d18.g1 PHD_FILE: MSMg01no276_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,241,074 - 35,241,310)(35,390,003 - 35,390,317)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACAATCCCCCAGTGGTAAGGGTCTTCCTGGTGTGGCCCTCGTT
GGTCTTAGGTCCCCTGTGCCTCGTCGACCCATTCCAGCTGCAAAGCGTGT
GTGAAACGCAGAGGCCAGGTCAGACGCAGAGCTGAGATTTTGCTACTCTG
TTGGAACCCCCTAACTCCATTAGGTGTAATGTCTATGGGGATCTTGTCTG
CTCACACATACACATGTGCACATGCATGCATGTGTGTCCATGCAGTTAAA
TATGTCCCCTGAAGTCAGCATGGTGATGATCAACAGTCATGTCATTTCAA
AGTCTCATCTTTCTTTACCACCCCCCACCCGCGACTCTTTACCAATTAAG
CCTTTTATAGAAGCCAGAGCCTGCCCTTGCATTTAGTTCACTTCCATGGA
GACACGGGGAGAGGCTCATTCCACAGACTCCATCGATCACGTTGTTAGTG
GAACAGAGCTGGGCAGCATTTGCATGAACCATCCTTGTGTCCAAAGTATC
ATGTGTACACTAGGCTCCCCAGGTGCCTGGAAGCAGAACTCCAGGAGGGT
TTGACTGGTACCTCCCCTCTAGTCATAACCCAAGAAGAATTCCTGCAGAG
AGGGTTAGCACCCGTGAAGACCTGGTGCACACCCTAGCCTGCTTCTTGNT
AGACAGTGAGAGCAGGCAGTGAGTGAAGCAAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGATCAAGTCAGGTTACCAAG
CTTGATGGCACGCACCTTTATGCACTAAGCCATCTCGCCAGAACTGCTTG
GTGTTTTATTTAAAAGTCATATTTATGATGGAAAGTATGGCTGAGTGTTA
GAGCATTTGAGAGAGAAAGGAGGGGAGGACCAGAAGATCTATCAAAACTT
AAAAGTGATTATCTTGAAAAGATAAAATAATGAGTGACTTCATGCTAATT
TTCTCAATATGCCAATGTCTTTTCAACAGAACATTTAAAATTTCACACAA
ATTACATCCAAAATGTTTATGGCACCCCCCGCCCCGCAAAAATTTAGATA
CAAAACATATGTACTATGAAATGATTTATTTGGATTTGTTTTTGTCTTGT
CCTGTTTTGTTTTTATATTTTGCTCTGAGTAATTTTAAGCTTGCCATTCT
TCTGCCTCTAGCTTTGCAGTGCCAGGAGAACCAGTACCCACTTTCATGCC
AGGTGTTTGGCTTTTTTTATGGTAAGAAATAAAGGAAATACAACAATAAT
TTGGTAATTCCCTCTGGAAGTCAAAATAACAGCTGCCATTACTTTCTCTT
TCTTCCTCGTGTTTTTGCAGATTTTATAAAGGACATAAGTTACTTTTATA
ATGGCAAGAAATCAAAACAAAATGTTACAAAAGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d18.b1 MSMg01no276_d18.b1 CHROMAT_FILE:
MSMg01no276_d18.b1 PHD_FILE: MSMg01no276_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:08 2005
         (290 letters)



>mm_chr16_35240821_35241510
          Length = 690

 Score =  453 bits (234), Expect = e-132
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcacgttgttagtggaacagagctgggcagcatttgcatgaaccatccttgtgtccaaag 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcacgttgttagtggaacagagctgggcagcatttgcatgaaccatccttgtgtccaaag 313

                                                                       
Query: 114 tatcatgtgtacactaggctccccaggtgcctggaagcagaactccaggagggtttgact 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatcatgtgtacactaggctccccaggtgcctggaagcagaactccaggagggtttgact 373

                                                                       
Query: 174 ggtacctcccctctagtcataacccaagaagaattcctgcagagagggttagcacccgtg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggtacctcccctctagtcataacccaagaagaattcctgcagagagggttagcacccgtg 433

                                                                    
Query: 234 aagacctggtgcacaccctagcctgcttcttgntagacagtgagagcaggcagtgag 290
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 aagacctggtgcacaccctagcctgcttcttggtagacagtgagagcaggcagtgag 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no276_d18.g1 MSMg01no276_d18.g1 CHROMAT_FILE:
MSMg01no276_d18.g1 PHD_FILE: MSMg01no276_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:08 2005
         (316 letters)



>mm_chr16_35389714_35390429
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatttagatacaaaacatatgtactatgaaatgatttatttggatttgtttttgtctt 60
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 604 aaaatttagatacaaaacatatctactgtgaaatgatttatttggatttgtttttgtctt 545

                                                                       
Query: 61  gtcctgttttgtttttatattttgctctgagtaattttaagcttgccattcttctgcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtcctgttttgtttttatattttgctctgagtaattttaagcttgccattcttctgcctc 485

                                                                       
Query: 121 tagctttgcagtgccaggagaaccagtacccactttcatgccaggtgtttggcttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagctttgcagtgccaggagaaccagtacccactttcatgccaggtgtttggcttttttt 425

                                                                       
Query: 181 atggtaagaaataaaggaaatacaacaataatttggtaattccctctggaagtcaaaata 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 atggtaagaaataaaggaaatacaacaataatttgataattccctctggaagtcaaaata 365

                                                                       
Query: 241 acagctgccattactttctctttcttcctcgtgtttttgcagattttataaaggacataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acagctgccattactttctctttcttcctcgtgtttttgcagattttataaaggacataa 305

                          
Query: 301 gttacttttataatg 315
           |||||||||||||||
Sbjct: 304 gttacttttataatg 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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