BAC Information

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BAC

Clone NameMSMg01-277C15
Chromosome16 (Build37)
Map Location 56,317,538 - 56,317,901
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2
Downstream geneLOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C15.T7 (MSMg01no277_c15.b1)MSMg01-277C15.TJ (MSMg01no277_c15.g1)
ACCAG415142AG415143
length758760
length of high quality
(start - end)
371 (386 - 756)375 (386 - 760)
definitionCHROMAT_FILE: MSMg01no277_c15.b1 PHD_FILE: MSMg01no277_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005CHROMAT_FILE: MSMg01no277_c15.g1 PHD_FILE: MSMg01no277_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCATGGAAACGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAAAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCTTTTTGGCCCCACCGCACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATTATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTCAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAAC
AAAACACN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATAACTTCTCACTCCTCATAGGCCC
AACTTATTAATGCTGCTATAAAGCCTCATGCCGGGCAGTGGTGGTGCACG
CCTTTAATCCCGGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCA
AGGCCAGCCTGGTCTACAAAGTGAGTCCCAGGACAGCCAGGGCTACACAG
AGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAAAAACAGTTTTCATG
TGAAATTTGGTGAGACTACATGTGTTTAAACTGTAGCATTTACTTATTTA
GAAACATACCAAGTGTTTTTTTTACCCCCGCCCCCAATTTCTGATTTTTC
TTAGAGAAATGAACAGTGGAATATTTTGAAATTATGTCATCCAATGTTCT
TTTTTTCTTTTTGCCCAGAATTCTAGCCCTTCTGTCCACTTTCAATTCCC
TTTTTGATTGTTCAGATCTTCACATAGACAGGCCACATGGAAGACGAAAC
AAACTTCCTGAGTTTATTGCTAGGTTACCAGTGGGGAAATCCAAAGATCT
GATACAGATTCTCTCAAAAGTTGTATTTGTGCCTCTGGGTATTATGGGAA
TATCAACTTTATTAAGCTGTACAAGACATAGTATATTATCTATAGACTTA
CTATAAAACAGAAGATACAATGTATATCTTTTAAAAACACAAAACAATGC
TGTATGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c15.g1 MSMg01no277_c15.g1 CHROMAT_FILE:
MSMg01no277_c15.g1 PHD_FILE: MSMg01no277_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:15 2005
         (375 letters)



>mm_chr16_56317338_56318113
          Length = 776

 Score =  619 bits (320), Expect = 0.0
 Identities = 356/376 (94%), Gaps = 14/376 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttctgatttttcttagagaaatgaacagtggaatattttgaaattatgtcatccaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aatttctgatttttcttagagaaatgaacagtggaatattttgaaattctgtcatccaat 260

                                                                       
Query: 61  gttcttttttt--ctttttgcccagaattctagcccttctgtccactttcaattcccttt 118
           |||||||||||  |||||||||||||||||||||||||||||||            ||||
Sbjct: 261 gttctttttttttctttttgcccagaattctagcccttctgtcc------------cttt 308

                                                                       
Query: 119 ttgattgttcagatcttcacatagacaggccacatggaagacgaaacaaacttcctgagt 178
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 ttgattgttcagatcttcacatagacaggccacatggaagacaaaacaaacttcctgagt 368

                                                                       
Query: 179 ttattgctaggttaccagtggggaaatccaaagatctgatacagattctctcaaaagttg 238
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 369 ttattgctaggttaccagtggagaaatccaaagatctgatacacattctctcaaaagttg 428

                                                                       
Query: 239 tatttgtgcctctgggtattatgggaatatcaactttattaagctgtacaagacatagta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatttgtgcctctgggtattatgggaatatcaactttattaagctgtacaagacatagta 488

                                                                       
Query: 299 tattatctatagacttactataaaacagaagatacaatgtatatcttttaaaaacacaaa 358
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 489 tattatctatagacttactatacaacagaagatacaatgtgtatcttttaaaaacacaaa 548

                           
Query: 359 acaatgctgtatgtgg 374
           ||||||||||||||||
Sbjct: 549 acaatgctgtatgtgg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)