BAC Information

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BAC

Clone NameMSMg01-277J07
Chromosome16 (Build37)
Map Location 70,859,891 - 70,860,129
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J07.T7 (MSMg01no277_j07.b1)MSMg01-277J07.TJ (MSMg01no277_j07.g1)
ACCAG415442AG415443
length733735
length of high quality
(start - end)
239 (129 - 367)235 (132 - 366)
definitionCHROMAT_FILE: MSMg01no277_j07.b1 PHD_FILE: MSMg01no277_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:45 2005CHROMAT_FILE: MSMg01no277_j07.g1 PHD_FILE: MSMg01no277_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTAACAGTGATCTAAAATTGGCACTTGAGTCTGCTGATATTCAC
TTACAGACACTAATAAACTTTAAACCGAGTAGCAGGCTTATGGGAGACCA
TTGATTCTCAAGCAAGTGTGCTTAGGTTTATGGTCACTTGCAGGTCATGC
TTACCCTTGCCTTTGTTGTCTTCATGACACCCAGGCATGCATTTGAGGCT
TCTTTCAGATGTACTTGGAGCATACTTCACACAAGGAAATGCCCCCATCA
AGAAGTGGTCTCTACCTAACCCACCTTTGAAGTTAAATTATGCTGTACAG
ATATTTGCCCAGCTTCTTTTATTCCTCCACCCCCCCCTAGAACACTTGTA
TCTTAACTATATCTTGTCTGCTTGATTCTTGCTGCAAGAATCATATTCCA
CACAGCTTCAATTCTACTTTTAAAAAATGCACCATTAGCTTGTACAGAGT
TCCCAAAGAGTTTGATGAAATCTTTAAAATTGAAATGAAGATAAACATGA
TGAAGTATTCCACAGAGTCAGAAGAGATCATTTTTGCCTGATCTTCCAAC
TTTCTCAGACATCATACCTAGGATCAGAACTTGTCACTGTGCCTAGAGGC
CACATACCCCTGGTTTGCTTCTACCTTTAGAACTTTTTCTATTATAGAAA
TAACTTTACTCACAAACTCAGCACTTTTTGCTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGTCGGGTTTTCACACC
TGCATGAAAGTGTTTCCACCCTCTGAGCCATGGTCATGAAGTTTTAATGT
CAGGTTATTATTACAGGAGTGTGCAATGTTCCGACATCCTCAGGTCTGAA
CACTAGGCTCTCAGCTGCCAAAATTGTTTTGGGTGTTTGTAAGCCTTTTA
GACATGGGGTTCATCTGATAGACTTAGGATTATAAAAGTAGAGCTTGATG
ATTTATAGCAGCTCTTGTCCTCATGGGAGCTCTGCTTCCTGGCTATAGAT
GTAACCCACTGCATTATTTTCTTTTTTTTATACCCCCGAGCCACACCTTC
CACCAATCTTTATTCTGCAACATACATTCTAGTTCTCAAAACCTTAGGCA
GAATAAGCCATTTCTTTCAGAGGCTACATTCTCAGGTATTGTATTAGAAA
AAAATTACAACCAATATAGGAGTCTATAAAACTTTTCTTTCTCTTTCACT
ACTTCAGGAGATTTTTCTGATTTTATAGCTTTTTTCCCATTTAGCCCCAA
ATAACATATTGGTATTCTGTAGCTACTAAATAATAAATAGTCTAGCTATA
TTTTGATAAACAAATGTTGTATCCTCATCAATTCATATGCCATATTTATT
TTTAGAACATGAATTAACACTTAGCTAAAGTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j07.b1 MSMg01no277_j07.b1 CHROMAT_FILE:
MSMg01no277_j07.b1 PHD_FILE: MSMg01no277_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:45 2005
         (239 letters)



>mm_chr16_70859691_70860329
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagcaggcttatgggagaccattgattctcaagcaagtgtgcttaggtttatggtcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtagcaggcttatgggagaccattgattctcaagcaagtgtgcttaggtttatggtcact 380

                                                                       
Query: 61  tgcaggtcatgcttacccttgcctttgttgtcttcatgacacccaggcatgcatttgagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 379 tgcaggtcatgcttacccttgcctttgttgtcttcatgacacccaggcgtgcatttgagg 320

                                                                       
Query: 121 cttctttcagatgtacttggagcatacttcacacaaggaaatgcccccatcaagaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttctttcagatgtacttggagcatacttcacacaaggaaatgcccccatcaagaagtgg 260

                                                                      
Query: 181 tctctacctaacccacctttgaagttaaattatgctgtacagatatttgcccagcttct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctctacctaacccacctttgaagttaaattatgctgtacagatatttgcccagcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)