BAC Information

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BAC

Clone NameMSMg01-278C17
Chromosome16 (Build37)
Map Location 28,412,216 - 28,412,443
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneCcdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278C17.T7 (MSMg01no278_c17.b1)MSMg01-278C17.TJ (MSMg01no278_c17.g1)
ACCAG415868AG415869
length679681
length of high quality
(start - end)
230 (118 - 347)231 (107 - 337)
definitionCHROMAT_FILE: MSMg01no278_c17.b1 PHD_FILE: MSMg01no278_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:25 2005CHROMAT_FILE: MSMg01no278_c17.g1 PHD_FILE: MSMg01no278_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGTT
TTTCATATACATTTCCTGATACCCATGGCATTCAAAAGAGGACATCAGAT
CCCTTGGCACCCGGAATTGAGGGTTGTTGTGAGCCATCATGTGGCTTCTG
GGAATGTAACCAGGTTCCTCTAAAAGAAAAACAAAAAACAAACAAACAAA
CAAAAAATACAAGTGTTCTTAACTGCTGAGCTCCCCAGTGATATTTTTGA
TACAGATTATTTAAGTTAGCATTGAGGTTTGAAATGTCTTTCCTAGTTTG
CTCTGTTCTTCTTATCACTGTTTGAGATGAGAGCCCTCATCTCTCTTTTC
TTAGTTCCCGCTACCTGCCGCCTGCTGCCTGACTGTCCCTCTTATTGTGG
ATCCTAACCCTCTGGAAACACCATGCCAGATAAACAGGTTTCTTCTGTAA
GATGCCTTGGGCATTATGTTTTATCTCAGCAATTTAAAATTAACAAATAT
GGAAGTAATTCTCAGGAGGGAGCGGTTGCTGTGACAGCTCTGACCTGACC
ATGTTTTCATTTTGAGGACTCTGAAAGAGTTGGGGATTCTACGCCATAAA
GCGGCTGAATAACTCAACTGACCATCCTAGTATGAGCTCGGAAGACAGTG
CTGGGAGCAATATAGACTATGGGACCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTAAGGTAGAAACAGATGCATACAAGCTATTTGTAGCATGA
TGACCAGGTTTTTAAGAGATGAACATTTTCCAGGACTGTACGTTAGGTAA
TATTTAAAACTTTGCAGTTAAATTATATGTGTTACACATTGCATGTGTGC
AAACAATTGATTTCTTGATAATATAGCACTCAGAAATGAATTGAAAGTAT
TTATCAATACAAATAGAACACTTTGAGATAGAGACATGTATGGGGCGCTA
TTGCCCATTTGGAAAACTCTCAGGACAAGTCCAGCATGTTNATGATCAAC
TCNNNACCTACCGCGACTGCAGACCCCATCACGGTGAGAAAAGCCAGATT
ATGCTCCTCAAAATAACTGTTCTGGTTCCAGACAGTTTGAGCCTAACAGC
TCCCTTCTCTTGGCAAACTTCAAGAAGCACACTTTAGGGTCTGAGATAGC
ATTGATTGGTTGGACCATGCCTTTTAAATCTTCTCAACCCTGAGATAAAG
GACAGTGAGCCTTTAATACCTATAATCCATTTTTAAAATCCCAAGCACTT
TTATATTTATTTGGTAGATACCCCATTAAGAATCATAAACAGGAACTACA
GAGATGACTCTACAGTTACTGTAGAATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_c17.g1 MSMg01no278_c17.g1 CHROMAT_FILE:
MSMg01no278_c17.g1 PHD_FILE: MSMg01no278_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:26 2005
         (231 letters)



>mm_chr16_28412016_28412646
          Length = 631

 Score =  426 bits (220), Expect = e-124
 Identities = 226/228 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtttttaagagatgaacattttccaggactgtacgttaggtaatatttaaaactttgca 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ggtttttaagagatgaacattttccagcactgtacgttaggtaatatttaaaactttgca 260

                                                                       
Query: 61  gttaaattatatgtgttacacattgcatgtgtgcaaacaattgatttcttgataatatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaaattatatgtgttacacattgcatgtgtgcaaacaattgatttcttgataatatag 320

                                                                       
Query: 121 cactcagaaatgaattgaaagtatttatcaatacaaatagaacactttgagatagagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactcagaaatgaattgaaagtatttatcaatacaaatagaacactttgagatagagaca 380

                                                           
Query: 181 tgtatggggcgctattgcccatttggaaaactctcaggacaagtccag 228
           |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatggggcgctagtgcccatttggaaaactctcaggacaagtccag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)