BAC Information

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BAC

Clone NameMSMg01-278F03
Chromosome16 (Build37)
Map Location 17,500,155 - 17,604,205
singlet/doubletdoublet
Overlap geneAifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
Downstream geneSmpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278F03.T7 (MSMg01no278_f03.b1)MSMg01-278F03.TJ (MSMg01no278_f03.g1)
ACCAG415975AG415976
length699719
length of high quality
(start - end)
244 (49 - 292)243 (58 - 300)
definitionCHROMAT_FILE: MSMg01no278_f03.b1 PHD_FILE: MSMg01no278_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:37 2005CHROMAT_FILE: MSMg01no278_f03.g1 PHD_FILE: MSMg01no278_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,603,964 - 17,604,205)(17,500,155 - 17,500,394)
sequence
GTACCATACGGAGCGGAGCCGCGGAATTCTAGAATAACTGCATCCGGAGG
ATTCTTCTCTCAAAGCTTGCCCATGTGTACAGATAACCATACGTCACTGT
GTCATTTCACAAGCATTACTGACGATGAAGTAAAGATAAACAATATGCTA
TTATTAATGCAAGAATACAATCTACAGTTAACACATGTAACTTCTTGATA
TGAAAAATTAAATTCTTCAATAAGCATTAAGTAAGGTAAAGGTGCACAAG
CAGAAGTGTTATATTTATTATATGTTGTAAAACTATAATTTGAATCCATT
TGAGCAGGAAATGAGCCATTAGACAAAATCATGTTTTTCTTCCGCCCCCG
CAATGTTCCAAAAATGTGACCGTCTAGCAGCTGGCTGATCCTTGAAAGCG
AATAACCCATTAGTGATTCCTCCATCTCCCAGGCCATCAATGGAACACCT
GTCGTCATCTCATTCATCCTGGTAACATTAGAAAGATTACAAGCCATCTG
ATTCCATTATGAACAAATATGTATAAACATTCCATAACGTCCCCCACTAA
TCCAGGTTGCCTTTTTCGATTGAATATTTTTTTCCACATTTACTTATAAC
AATATTGCCATTTACAAGGCCGGCATTTTTTATCTTTACCTTCCCCTCCG
TGTTATTCTTGACCATGATCCCTCCCCCTTTTTTATGTATTCCCTCCCN
TGGCGGCCGCCTGATCGGACCGGGGTAGGNGACACTATAGAAGTACAGGC
AGNGGTCCATGCCCTGGGCCATAAGTGTCCTCACTATGGAGCGCCCCTTG
TGACAGGTAAGAAAGTGTGAGGTATACATGGGAGGTGGGCTACACCATCC
ATGCCTATATAGGGATTCTAGAAGGCCCCAGGGCCTTCAGTCATTTGTGA
GGGCTCCTGGGTTGGGGAGAGGTCCAGCAGGGTCTAGTCTCTTCTGGGCA
TGGCGCTAGACTGGCACTCATTTGTCTCTCCTAGGTGTACTGTCCCGTTT
TTTTGTGTTCTGCCCCTGGCATGGTGCCTGCTTCAACATTAGAATAGTTC
CCCCACACCCCCCCCAGGNNTGGANAGNNTGNATAAGNTNNNGGNNNGTA
AAAAAATAGNAAAAAATGGGGGGCGGGGGGGGGGATTAAGATACTGAAGT
ATCTCATAGCTTGGTGCTGATAATGCCCTCACAGGTGAAGATTGACAAGG
AGAATGTGACCCTTTCTTTTCGCCAGCTTTGTACCCGGGAGACTCATGTC
TCTATGTTTCCAGCTTTCACCAGTACTGGTATTTAATACCGCTGTCCATG
CTTTTTTTGGCTGGAATAATAGTTTGATGCCACCACCCTGTTTCTGGTTT
TATTTCCCGGCTCCGTTATCCGCAACGCGATGTATACTTTCCGATATTTC
CTGCTTTCGCTGCTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_f03.b1 MSMg01no278_f03.b1 CHROMAT_FILE:
MSMg01no278_f03.b1 PHD_FILE: MSMg01no278_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:37 2005
         (244 letters)



>mm_chr16_17603764_17604407
          Length = 644

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggattcttctctcaaagcttgcccatgtgtacagataaccatacgtcactgtgtcatttc 60
           |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 442 ggattcttctctcaaagcctgcccatgtgtacaggtaaccatacgtgactgtgtcatttc 383

                                                                       
Query: 61  acaagcattactgacgatgaagtaaagataaacaatatgctattattaatgcaagaatac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 382 acaagcattactgacgatgaagtaaagataaacaatatgctattattaacacaagaatac 323

                                                                       
Query: 121 aatctacagttaacacatgtaacttcttgatatgaaaaattaaattcttcaataagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatctacagttaacacatgtaacttcttgatatgaaaaattaaattcttcaataagcatt 263

                                                                       
Query: 181 aagtaaggtaaaggtgcacaagcagaagtgttatatttattatatgttgtaaaactataa 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 aagtaaggtaaaggtgcacaagcagaagtgttatatttattataggttgtaaaactataa 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_f03.g1 MSMg01no278_f03.g1 CHROMAT_FILE:
MSMg01no278_f03.g1 PHD_FILE: MSMg01no278_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:37 2005
         (243 letters)



>mm_chr16_17499955_17500597
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 233/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccctgggccataagtgtcctcactatggagcgccccttgtgacaggtaagaaagtg 60
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 201 catgccctgggccataagtgtcctcactatggagcgcccctggtgaaaggtaagaaagtg 260

                                                                       
Query: 61  tgaggtatacatgggaggtgggctacaccatccatgcctatatagggattctagaaggcc 120
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgagatatacatgggaggtgggctacaccatccatgcctatatagggaatctagaaggcc 320

                                                                       
Query: 121 ccagggccttcagtcatttgtgagggctcctgggttggggagaggtccagcagggtctag 180
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 321 ccagggccttcagtcatttgtgagggctcctgggttcgggagaggcccagcagggtccag 380

                                                                       
Query: 181 tctcttctgggcatggcgctagactggcactcatttgtctctcctaggtgtactgtcccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttctgggcatggcgctagactggcactcatttgtctctcctaggtgtactgtcccg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)