Query= MSMg01no278_f09.b1 MSMg01no278_f09.b1 CHROMAT_FILE:
MSMg01no278_f09.b1 PHD_FILE: MSMg01no278_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:38 2005
(289 letters)
>mm_chr16_78220869_78221557
Length = 689
Score = 522 bits (270), Expect = e-153
Identities = 285/292 (97%), Gaps = 5/292 (1%)
Strand = Plus / Plus
Query: 1 atacccattcaatagtctgcccctcgtagcaagctttctctgcttctttcc---tggtga 57
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 atacccattcaatagtctgcccctcgtagcaagctttctctgcttcttt--aagtggtga 257
Query: 58 cattataagtgctatgctagctttgcatggatgctgagattcaaacataggtctgtcctc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cattataagtgctatgctagctttgcatggatgctgagattcaaacataggtctgtcctc 317
Query: 118 atatggtaagcacttcatccactgagccatctccctgtgttcccccacaggaacttactc 177
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 318 atatggtaagcacttcatccactgagccatctccctgtgctcccccacacgaacttactc 377
Query: 178 tttttataaacgtcttgattgtggaatgtaatgcttatagctaggatgatacataggaat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttttataaacgtcttgattgtggaatgtaatgcttatagctaggatgatacataggaat 437
Query: 238 gttcataataaaatgccccgtatatataaatacacatataaaatgacataac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttcataataaaatgccccgtatatataaatacacatataaaatgacataac 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no278_f09.g1 MSMg01no278_f09.g1 CHROMAT_FILE:
MSMg01no278_f09.g1 PHD_FILE: MSMg01no278_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:38 2005
(283 letters)
>mm_chr16_78372886_78373571
Length = 686
Score = 476 bits (246), Expect = e-139
Identities = 275/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Minus
Query: 1 cacggtttagccttgggaggccagagctgtggtcaccagttatgtccctgt---gagttt 57
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct: 415 cacggtttagccttgggaggccagagctgtggtcaccagttaggtccttgtgaggagttt 356
Query: 58 ggctcctgcttgagtagacttttgctgctatcatgagtgcctagggctcttcacaaatct 117
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 355 ggctcctgcttgagtagacttttgctattatcatgagtgcctagggctcttcacaaatct 296
Query: 118 ggaggacctaaatctctcagaaatgagcgtggcgattagagttgagagaaaggagtttgt 177
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 295 agaggaccttaatctctcagaaatgagcgtggcgattagagttgagagaaagtagtttgt 236
Query: 178 ttttgtatctaaaggtaatgtataggctgtactttttattattattattgtgattattat 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 235 ttttgtatctaaaggtaatgtataggctgtactttttagtattattattgtgattattat 176
Query: 238 tttattttattttttgaagagggcactgatgacacaggccttaatc 283
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttattttattttttgaagagggcactgatgacacaggccttaatc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 686
Length adjustment: 9
Effective length of query: 274
Effective length of database: 677
Effective search space: 185498
Effective search space used: 185498
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
