BAC Information

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BAC

Clone NameMSMg01-278K15
Chromosome16 (Build37)
Map Location 28,412,228 - 28,412,449
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneCcdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278K15.T7 (MSMg01no278_k15.b1)MSMg01-278K15.TJ (MSMg01no278_k15.g1)
ACCAG416233AG416234
length758766
length of high quality
(start - end)
86 (293 - 378)222 (191 - 412)
definitionCHROMAT_FILE: MSMg01no278_k15.b1 PHD_FILE: MSMg01no278_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:03 2005CHROMAT_FILE: MSMg01no278_k15.g1 PHD_FILE: MSMg01no278_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGCGTCTCGGAGCGACCNAAACGNACTGCGGTCCCCCCNTCATACNNN
CNCCATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGAGGCCG
CGCGGNAANCACGTGTTAACCCCACCAGGGCNGANACCCANGGCANNCAA
AAGAGGACANCAGAACCTTTTGAACCCAAAAAGAGGGGNGNNGNGAGCCA
NCAGGGGGNNNCGGGGAAGGNAACCAGGNNCCNCNAAAAGAAAAACAAAA
AACAAACAAACAAACAAAAAAGACAAGGGGNCGGAACAGCGGAGCTCCCC
AGTGATATTTTTGATACAGATTATTTAAGTTAGCATTGAGGTTTGAAATG
TCTTTCCTAGATTGCTTTTTTTTTTTTAACACAGANAGAGANGAGAGCCC
NCAACNCGCCGCTCTTATTTTCCCCCCCCCCGCCCCCTGCTGCCTGACTG
TCCCTCTTATTGTGGATCCTAACCCTCTGGAAAAAAAGGACAGATAAGCA
GGGGGCTTCTGTAAGATGCCTTGGGCATTACGTTTTATCTCAGCAACTTA
AAATTAACAAATATGGAAGTAATTCTCAGGAGGGAGCGGTTGCTGTGATA
GCTCTGACCTGACCATGTTTTCATTTAGAGGACTCTGAAAGAGAAGGGGA
TTCAACGCAAGAAAGAGGTTGAAAAAACCAACCGACCATTTTATTTATGA
GCTCGGAAGACAGAGCTGGGAAAAACATAGACCAAGGAGACCCACCCGAA
AAGAATTA
NNNGGTTTTTTTTTTAATNNTTTATCTACCACGCCGGTCTGAGTTAATAT
NNCCCTCTATGAAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCCCGCGAGAATTCTAAGGNAGAAACAGATGC
ATACAAGCTATTTGTAGCATTATGACCCGGATTTTAAGAGATGAACATTT
TCCAGGACTGTACGTTAGGTAATATTTAAAACTTTGCAGTTAAATTATAT
GTGTTACACATTGCATGTGTGCAAACAATTGATTTCTTGATAATATAGCA
CTCAGAAATGAATTGAAAGTATTTATCAATACAAATAGAACACTTTGAGA
TAGAGACATGTATGGGGCGCTAGTGTCCATTTGGAAAACTCTCAGGACAA
GTCCAGCATGTATATGTTCTTCTGCCACAACCTGCGCCTGCAGATCCCAT
CACGGTGAGAAAAGCCAGATTATGCTCCACAGAATAACTGTTCTGGGTCG
AGAGAGTTTGAGCCTAACAGCTCCCTTCTCTTGGTAAACTTCAAGAAGCA
CACTTTAGGGTCTGAGATAGCAGTGATTGGTTGTACCATGCCTTTTAAAT
CTTCTCAACCCTGAAATAAAGGAAAGTGAGCCTTTAATACCTATAATCCA
TTTTTAAAATCCCAAGCCCTTTTATATTTATTTGGCAGACACCCCATTAA
GAATCATAACCTGGAACTAGAGAGATGAATCCACAGTTACTGGTACAATC
CTTGACTTCAGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_k15.g1 MSMg01no278_k15.g1 CHROMAT_FILE:
MSMg01no278_k15.g1 PHD_FILE: MSMg01no278_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:04 2005
         (222 letters)



>mm_chr16_28412028_28412649
          Length = 622

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacattttccaggactgtacgttaggtaatatttaaaactttgcagttaaattatat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaacattttccagcactgtacgttaggtaatatttaaaactttgcagttaaattatat 260

                                                                       
Query: 61  gtgttacacattgcatgtgtgcaaacaattgatttcttgataatatagcactcagaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttacacattgcatgtgtgcaaacaattgatttcttgataatatagcactcagaaatg 320

                                                                       
Query: 121 aattgaaagtatttatcaatacaaatagaacactttgagatagagacatgtatggggcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgaaagtatttatcaatacaaatagaacactttgagatagagacatgtatggggcgc 380

                                                     
Query: 181 tagtgtccatttggaaaactctcaggacaagtccagcatgta 222
           ||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 381 tagtgcccatttggaaaactctcaggacaagtccagaatgta 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)