BAC Information

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BAC

Clone NameMSMg01-278P17
Chromosome16 (Build37)
Map Location 4,950,303 - 4,950,959
singlet/doubletsinglet
Overlap geneAnks3
Upstream geneNlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1
Downstream gene4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, A2bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278P17.T7 (MSMg01no278_p17.b1)MSMg01-278P17.TJ (MSMg01no278_p17.g1)
ACCAG416470AG416471
length726726
length of high quality
(start - end)
657 (70 - 726)275 (377 - 651)
definitionCHROMAT_FILE: MSMg01no278_p17.b1 PHD_FILE: MSMg01no278_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:28 2005CHROMAT_FILE: MSMg01no278_p17.g1 PHD_FILE: MSMg01no278_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTACAAAGAGGATCCGCGG
AATTCAGGAGTTCCAGACAGGAGGATTGTGAGTCAGCCGGGGCTTATGGG
GTGAAACCCAGAAGGGAAAACAAAGGATAGGGAGCAGAAACACAGAATGT
GTCACATCTGTAGTCCCAGCTACTCAGGACCAGAATGTGGGCAGAGCCAG
GACAGGGGCACTAAAATCCTCACACATCACAACTGCTGTGACATCTATTT
GACCGGAATATCCAATGAAAAGAAAAAAATCCATAGAATAAAACCAAAGT
CTTGAGTTATCAGGGACTCTTGTAGTCTGTCATTAGGTCAATTCTGAGCC
TCACTCCTGTGGTATCCAATCCTACTATAGTCTGAGGCCAGGGACCCACA
TTCCAGGGCAGTCCTGTGCATATCCAGTCTCGGCATGTGATACCAAAGAG
CTTTGGGAACCGTGGCTCTCACCATAGGTGGTCTGAGTCTTCCCTCCGAG
TCCAATAGCTGTGATCTTGGCCAGGGCACGCGGCCCCTCATGGATACTGA
GGCCCTTTTTTCGGCAGGGCCTCTGGCGCTGAGGAACAGGCCAGGACTCA
TCTGAAGAGCTCAGATCTTCATATTTTTCTGTAGGTCAGACATGAGAATT
AAGACATTGGTTCAGTAATGATCTCACGTGCCAGCGCTGAGCTCTCAGGC
CATGTGTCTGTGTATGCTTTTTGGAA
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGACAACAAAAATTCTTGGGGCAAGACTTGGTCTTGGGAGA
TATTTAGGGTTGCTGTTTACCAATAAAATGTTTACCTGTCTTAAGTCTAA
GTCACTTTGGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACAGACTGCT
CTTCCGAAGGTCCTGAGTTCGAATCCCAGAAACCAGATGGTGTCTCACAA
CCATCCGTAATGTGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCT
ACAATGTACTTATTTATATATTTAAATAAATAAATAAATCTTTTTTAAAA
AAGTCTATTTTTCTTTGCCGCCACCGCTGACCTGCCTGTCTGAGTTCCTT
TCAGGCCAGAAAACTATAGACTCTGGCATTTGGCACCACGTTTCACCATG
TGTTACATAAGTGTGTGCGTGGGGGAGGGGACTAAGTAAAGGATTAATTG
TTAGGATCTTTCCCTCTTGTCCAGAAGCCTCTCCTTGTCTGGCTGAGGGG
AGGTTTGGCACAATAAACTTGTATTGAACTGGAGAAGAGAGTCACACTTG
CAAAAAGAAAAACTTTTATACAAATGAATATGTATAAACTCACATAAATT
CATATACAGATTCATGCATACAGATTCATACATCTCCATTTAAACCACTT
GGGACACAGGGTAATGACTGGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_p17.b1 MSMg01no278_p17.b1 CHROMAT_FILE:
MSMg01no278_p17.b1 PHD_FILE: MSMg01no278_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:28 2005
         (657 letters)



>mm_chr16_4950103_4951159
          Length = 1057

 Score = 1216 bits (629), Expect = 0.0
 Identities = 650/657 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggattgtgagtcagccggggcttatggggtgaaacccagaagggaaaacaaaggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 201 ggaggattgtgagtcagccggggcttatggggtgaaacccagaagggaaaagaaaggaca 260

                                                                       
Query: 61  gggagcagaaacacagaatgtgtcacatctgtagtcccagctactcaggaccagaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagcagaaacacagaatgtgtcacatctgtagtcccagctactcaggaccagaatgtg 320

                                                                       
Query: 121 ggcagagccaggacaggggcactaaaatcctcacacatcacaactgctgtgacatctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagagccaggacaggggcactaaaatcctcacacatcacaactgctgtgacatctatt 380

                                                                       
Query: 181 tgaccggaatatccaatgaaaagaaaaaaatccatagaataaaaccaaagtcttgagtta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tgaccggaatatccaatgaaaagaaaaaaatccacagaataaaaccaaagtcttgagtta 440

                                                                       
Query: 241 tcagggactcttgtagtctgtcattaggtcaattctgagcctcactcctgtggtatccaa 300
           |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tcagggactcctggagtctgtcattaggtcaattctgaggctcactcctgtggtatccaa 500

                                                                       
Query: 301 tcctactatagtctgaggccagggacccacattccagggcagtcctgtgcatatccagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctactatagtctgaggccagggacccacattccagggcagtcctgtgcatatccagtc 560

                                                                       
Query: 361 tcggcatgtgataccaaagagctttgggaaccgtggctctcaccataggtggtctgagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcggcatgtgataccaaagagctttgggaaccgtggctctcaccataggtggtctgagtc 620

                                                                       
Query: 421 ttccctccgagtccaatagctgtgatcttggccagggcacgcggcccctcatggatactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccctccgagtccaatagctgtgatcttggccagggcacgcggcccctcatggatactg 680

                                                                       
Query: 481 aggcccttttttcggcagggcctctggcgctgaggaacaggccaggactcatctgaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcccttttttcggcagggcctctggcgctgaggaacaggccaggactcatctgaagag 740

                                                                       
Query: 541 ctcagatcttcatatttttctgtaggtcagacatgagaattaagacattggttcagtaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcagatcttcatatttttctgtaggtcagacatgagaattaagacattggttcagtaat 800

                                                                    
Query: 601 gatctcacgtgccagcgctgagctctcaggccatgtgtctgtgtatgctttttggaa 657
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacctcacgtgccagcgctgagctctcaggccatgtgtctgtgtatgctttttggaa 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)