BAC Information

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BAC

Clone NameMSMg01-279A24
Chromosome16 (Build37)
Map Location 66,625,783 - 66,733,059
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279A24.T7 (MSMg01no279_a24.b1)MSMg01-279A24.TJ (MSMg01no279_a24.g1)
ACCAG416525AG416526
length720722
length of high quality
(start - end)		674 (45 - 718)643 (77 - 719)
definitionCHROMAT_FILE: MSMg01no279_a24.b1 PHD_FILE: MSMg01no279_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:34 2005CHROMAT_FILE: MSMg01no279_a24.g1 PHD_FILE: MSMg01no279_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,732,390 - 66,733,059)(66,625,783 - 66,626,425)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCGGGTACAGTCAGCAGATGGACTAGAGCTATTTATCAGGGTAAA
GTGCTAGAAAAATGTTTGCTGTTACTTGAGGACTTTTTCTGAAAGAATGA
CAAGCAACCTTTCAACAGCCAAATAATCCGTCAAGAATTGTGAATATTTG
GGGGTTGCATGACAAACAGATAAAATCAAGCCCCAGTACAGTTAATTCCA
GGTAATTGGGGAAGTGTTTCTAATTCTCTTGCTGTGTAAATTATATGCCT
ATCTGCCGGGAACAAAACTTTTAAGGATTACCCGAAGGTTTTTCATAACC
TAACACTGGAAACATTGCTTGAGGTCTCTTTGATATTCTGAATACTTTAA
ACTGGTTTTAATGAAATCAAGGAAGATTTGGTCATTGAACACTACTAAGC
TGTTCTATGGCTCACCGTTTTATCCCTGGATTTGAATCAAATTTTAATTT
ATGACAAGTTTACTAATTATAGTTTGGAGACTGAACGTTATTTTTCAAAT
CCTTATTCAGTAACTTCTTTTTGCTGTCCTCTATTTAAATGAGTCATAAA
CCTGTCTGAACATCAGTCACATCGCGTGTTCCATGCTAGTTGACTCGATA
CTTATTAAAGACTCCTAGATACTGCAAATTTGTTAGAAGGCGTTACCAGC
TAATCGGGGTAAGAATTGCA

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTTCTGGTAGAAGACATGCA
TGCTTTTAGAGACCCAGTAACACAATATGCCTTAAACCAGAAAGTTAAAT
AACTATAATTAAATTTTTGTAGACATATGCCATCAAATGTTAATTCTAAA
TTAGTTGGAAATATTAAGATTAAGATGGGTTGAGTGACCTAGCCAACCAC
ACACCACTGCTTAGCAATACTGTATACTGTAGAGTGCTGGTTAGATGCTC
TCAGGATCCCATGGATGGCTGGGAACTGTGGCTCACTGCTCACAATTAGA
ATTACACCAGAGCACTATTTCCTATGAACAGTCTGGGAAAATATAAAAAT
TCAGAAAACGACTTGTAGTTTTACTGTATGTGTGTGGCTTTTAAAATACT
GGAAAGTCAAAATGCTAGAAAGATATTGGAAATTGAGCAGGCTTGTGCTC
TAAAACTTTAATTCATTCATGTTTTATTTAATCTGCAAGCATTGCCTGGC
ATCTACCATATGCTGGCCTGTAAAATAGATACTAGGAATTAAAATGTCTT
TTCTGTTTATCACAAAGTTCTTTTCTTTCCTCTGCTATAGGCAGAGATTC
AGTACATTTATTGTGCTAACAGTTCCTATTTGTCCATAANAGAGAGCAAG
ATAAACACAGTGCAGACATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_a24.b1 MSMg01no279_a24.b1 CHROMAT_FILE:
MSMg01no279_a24.b1 PHD_FILE: MSMg01no279_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:34 2005
         (674 letters)



>mm_chr16_66732186_66733259
          Length = 1074

 Score = 1249 bits (646), Expect = 0.0
 Identities = 664/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcgggtacagtcagcagatggactagagctatttatcagggtaaagtgctaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gaattcagcgggtacagtcagcagatggactagagctatttatcagggtaaagtgctaga 815

                                                                       
Query: 65  aaaatgtttgctgttacttgaggactttttctgaaagaatgacaagcaacctttcaacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aaaatgtttgctgttacttgaggactttttctgaaagaatgacaagcaacctttcaacag 755

                                                                       
Query: 125 ccaaataatccgtcaagaattgtgaatatttgggggttgcatgacaaacagataaaatca 184
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 754 ccaaataatccgtcaagaattatgaatatttgggggttgcatgacaaacagacaaaatca 695

                                                                       
Query: 185 agccccagtacagttaattccaggtaattggggaagtgtttctaattctcttgctgtgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agccccagtacagttaattccaggtaattggggaagtgtttctaattctcttgctgtgta 635

                                                                       
Query: 245 aattatatgcctatctgccgggaacaaaacttttaaggattacccgaaggtttttcataa 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 634 aattatatgcctatctgccgggaacaaaacttttaaggattatccgaaggtttttcataa 575

                                                                       
Query: 305 cctaacactggaaacattgcttgaggtctctttgatattctgaatactttaaactggttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cctaacactggaaacattgcttgaggtctctttgatattctgaatactttaaactggttt 515

                                                                       
Query: 365 taatgaaatcaaggaagatttggtcattgaacactactaagctgttctatggctcaccgt 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 514 taatgaaatcaaggaagatttggtcattgaacactactaagctgttctgtggctcaccgt 455

                                                                       
Query: 425 tttatccctggatttgaatcaaattttaatttatgacaagtttactaattatagtttgga 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 454 tttatccctggatttgaatcaaattttaatttatgacaactttactaattatagtttgga 395

                                                                       
Query: 485 gactgaacgttatttttcaaatccttattcagtaacttctttttgctgtcctctatttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gactgaacgttatttttcaaatccttattcagtaacttctttttgctgtcctctatttaa 335

                                                                       
Query: 545 atgagtcataaacctgtctgaacatcagtcacatcgcgtgttccatgctagttgactcga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgagtcataaacctgtctgaacatcagtcacatcgcgtgttccatgctagttgactcga 275

                                                                       
Query: 605 tacttattaaagactcctagatactgcaaatttgttagaaggcgttaccagctaatcggg 664
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacttattaaagactcctaggtactgcaaatttgttagaaggcgttaccagctaatcggg 215

                     
Query: 665 gtaagaattg 674
           ||||||||||
Sbjct: 214 gtaagaattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_a24.g1 MSMg01no279_a24.g1 CHROMAT_FILE:
MSMg01no279_a24.g1 PHD_FILE: MSMg01no279_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:34 2005
         (643 letters)



>mm_chr16_66625583_66626625
          Length = 1043

 Score = 1183 bits (612), Expect = 0.0
 Identities = 635/643 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttttctggtagaagacatgcatgcttttagagacccagtaacacaatatgccttaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atcttttctggtagaagacatgcatgcttttagagacccagtaacagaatatgccttaaa 260

                                                                       
Query: 61  ccagaaagttaaataactataattaaatttttgtagacatatgccatcaaatgttaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaaagttaaataactataattaaatttttgtagacatatgccatcaaatgttaattc 320

                                                                       
Query: 121 taaattagttggaaatattaagattaagatgggttgagtgacctagccaaccacacacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattagttggaaatattaagattaagatgggttgagtgacctagccaaccacacacca 380

                                                                       
Query: 181 ctgcttagcaatactgtatactgtagagtgctggttagatgctctcaggatcccatggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttagcaatactgtatactgtagagtgctggttagatgctctcaggatcccatggat 440

                                                                       
Query: 241 ggctgggaactgtggctcactgctcacaattagaattacaccagagcactatttcctatg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgggaactatggctcactgctcacaattagaattacaccagagcactatttcctatg 500

                                                                       
Query: 301 aacagtctgggaaaatataaaaattcagaaaacgacttgtagttttactgtatgtgtgtg 360
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accagtccgggaaaatataaaaattcagaaaacgacttgtagttttactgtatgtgtgtg 560

                                                                       
Query: 361 gcttttaaaatactggaaagtcaaaatgctagaaagatattggaaattgagcaggcttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttaaaatactggaaagtcaaaatgctagaaagatattggaaattgagcaggcttgt 620

                                                                       
Query: 421 gctctaaaactttaattcattcatgttttatttaatctgcaagcattgcctggcatctac 480
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 621 gctctaaaactttaattcattcatgttttatttaatccgcaagcattgcctggcttctac 680

                                                                       
Query: 481 catatgctggcctgtaaaatagatactaggaattaaaatgtcttttctgtttatcacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatgctggcctgtaaaatagatactaggaattaaaatgtcttttctgtttatcacaaa 740

                                                                       
Query: 541 gttcttttctttcctctgctataggcagagattcagtacatttattgtgctaacagttcc 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcttttctttcctctgttataggcagagattcagtacatttattgtgctaacagttcc 800

                                                      
Query: 601 tatttgtccataanagagagcaagataaacacagtgcagacat 643
           ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 tatttgtccataaaagagagcaagataaacacagtgcagacat 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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