Query= MSMg01no279_j04.b1 MSMg01no279_j04.b1 CHROMAT_FILE:
MSMg01no279_j04.b1 PHD_FILE: MSMg01no279_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:12 2005
(234 letters)
>mm_chr16_9465276_9465909
Length = 634
Score = 300 bits (155), Expect = 5e-86
Identities = 184/195 (94%), Gaps = 4/195 (2%)
Strand = Plus / Plus
Query: 1 agcctcacagtcatctaacatcaccgtgtgcatgagaatcctgagtccaaactcagctat 60
||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 201 agcctcacagtcacctaacatcactgtgtgcatgagaatcccgagtccaaaatcagctaa 260
Query: 61 ccatctctatgtcctaaattttaaaatctgcctgcctgcctgcctgtgtctgtgtctgt- 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctatctctatgtcctaaattttaaaatctgcctgcctgcctgcctgtgtctgtgactgtg 320
Query: 120 -ctgtgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgtctgtgtctg 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctg 380
Query: 177 tgtctgtgtctgtgt 191
|||||||||||||||
Sbjct: 381 tgtctgtgtctgtgt 395
Score = 147 bits (76), Expect = 5e-40
Identities = 87/92 (94%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgt-- 161
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgtgtctgtgtcggtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtgt 449
Query: 162 ctgtgtctgtgtctgtgtctgtgt--ctgtgt 191
|||||||||||||||||||||||| ||||||
Sbjct: 450 ctgtgtctgtgtctgtgtctgtgtgtctgtgt 481
Score = 139 bits (72), Expect = 1e-37
Identities = 88/96 (91%), Gaps = 8/96 (8%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtc--tgtctgtgtctgtgtctgtgtc--tgtgtctgtgtctgtgtctgt 159
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 406 ctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgt 465
Query: 160 gtctgtgt--ctgtgtctgtgt--ctgtgtctgtgt 191
|||||||| |||||||||||| ||||||||||||
Sbjct: 466 gtctgtgtgtctgtgtctgtgtgtctgtgtctgtgt 501
Score = 137 bits (71), Expect = 4e-37
Identities = 101/115 (87%), Gaps = 12/115 (10%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtctgtctgtgtc--tgtgtctgtgtctgtgtc--tgtgtctgtgtctgt 159
||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 462 ctgtgtctgtg--tgtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgt 519
Query: 160 gtctgtgtctgtgt--ctgtgtctgtgtctgtgtttcat---tctctgtgtctgt 209
|||||||||||||| |||||||||||||||||| || | ||| |||||||||
Sbjct: 520 gtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtc-tgtgtctgtgtgtctgt 573
Score = 137 bits (71), Expect = 4e-37
Identities = 101/115 (87%), Gaps = 12/115 (10%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgt 161
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 ctgtgtctgtgtctgt--gtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgt 547
Query: 162 ctgtgt--ctgtgtctgtgt--ctgtgtctgtgtttcat---tctctgtgtctgt 209
|||||| |||||||||||| |||||||||||| || | ||| |||||||||
Sbjct: 548 ctgtgtgtctgtgtctgtgtgtctgtgtctgtgtgtc-tgtgtctgtgtgtctgt 601
Score = 136 bits (70), Expect = 2e-36
Identities = 86/94 (91%), Gaps = 8/94 (8%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgt 161
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 430 ctgtgtctgtgtctgt--gtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgt 487
Query: 162 --ctgtgtctgtgtctgtgt--ctgtgtctgtgt 191
|||||||||||||||||| ||||||||||||
Sbjct: 488 gtctgtgtctgtgtctgtgtgtctgtgtctgtgt 521
Score = 134 bits (69), Expect = 6e-36
Identities = 95/107 (88%), Gaps = 10/107 (9%)
Strand = Plus / Plus
Query: 108 gtctgtgtc--tgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgt 165
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 404 gtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgt----gtctgtgtctgt 459
Query: 166 gtctgtgtctgtgt--ctgtgtctgtgtttcat-tctctgtgtctgt 209
|||||||||||||| |||||||||||| || | | |||||||||||
Sbjct: 460 gtctgtgtctgtgtgtctgtgtctgtgtgtc-tgtgtctgtgtctgt 505
Score = 134 bits (69), Expect = 6e-36
Identities = 99/113 (87%), Gaps = 12/113 (10%)
Strand = Plus / Plus
Query: 104 ctgtgtctgtgtc--tgtctgtgtc--tgtgtctgtgtctgtgtctgtgtctgtgtctgt 159
||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 ctgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgt---- 473
Query: 160 gtctgtgtctgtgt--ctgtgtctgtgtctgtgtttcat-tctctgtgtctgt 209
|||||||||||||| |||||||||||||||||| || | | |||||||||||
Sbjct: 474 gtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtc-tgtgtctgtgtctgt 525
Score = 130 bits (67), Expect = 9e-35
Identities = 87/97 (89%), Gaps = 10/97 (10%)
Strand = Plus / Plus
Query: 105 tgtgtctgtgtc--tgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgtctgtgtc-- 156
|||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 445 tgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtctg 504
Query: 157 tgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgt 191
||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgt 541
Score = 124 bits (64), Expect = 5e-33
Identities = 88/100 (88%), Gaps = 12/100 (12%)
Strand = Plus / Plus
Query: 104 ctgtgtc--tgtgtc--tgtctgtgtc--tgtgtctgtgtctgtgtctgtgtctgtgt-- 155
||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 476 ctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtgt 535
Query: 156 ctgtgtctgtgtctgtgt--ctgtgtctgtgt--ctgtgt 191
|||||||||||||||||| |||||||||||| ||||||
Sbjct: 536 ctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgt 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 49
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
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