BAC Information

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BAC

Clone NameMSMg01-280C02
Chromosome16 (Build37)16 (Build37)
Map Location 31,551,977 - 31,552,26632,930,664 - 32,930,897
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280C02.T7 (MSMg01no280_c02.b1)MSMg01-280C02.TJ (MSMg01no280_c02.g1)
ACCAG417300AG417301
length721754
length of high quality
(start - end)
293 (74 - 366)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no280_c02.b1 PHD_FILE: MSMg01no280_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:54 2005CHROMAT_FILE: MSMg01no280_c02.g1 PHD_FILE: MSMg01no280_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:54 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,551,977 - 31,552,266)(32,930,664 - 32,930,897)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTGGTGTCTCCACATCTGAGACGCCCAGCTTACTTCTGTTTTG
ACACAATCAGTCTCCTTCCTTTACCCCTGACTCTAGTTCCTATAGTGAAT
GGAGGGCTGTGGCCTCTACTTGACCTCTAACCCCTCACATCTGCAACCCA
CTCCGGTTTTCTTTGATTTTGTACTGGAAGGGAGACCAGGCTGGAACTGT
GAGCAGCCAGCTCTTCTTTGGCAGCCTCTAAAGCCAGGACCAGTCATCAG
ACAGCAGGCCCTGGGGCTTGAGAGGTGCTCATGTTACAAGGGTAAACAAA
ATGAGCCCATTCGTATTTTTTAGTTCCCATCCCCTCTCCTATATTTTCCC
TGAAGGTGGGGGAGGAGAGAGCAGCCATGTCATGCCAGTGGCCCATGGGA
ATTGTGCCCGTTCTTGGCACCTGAGAAACCCTTTCTTCTGCTCTGGCACT
GTATTGGCCTGGGAATGACCACTACGGTAGTTTAATTCTGACAGCTGTAC
AATAGTTTCTTCCCTTGTAGAGCCACCGTGTTCCTTCACAGCCTGCAAGT
CTCCTGGGTTGTCAGTATGCTAAATGAATCACCTGAGTAGATTTTTCTCA
CTAGGTGTTCTGGGTTATGGCGCCCTTTCCCCTGCTTCCGTCTGCTTCTG
CGATATAGAGTAGCCTCCAAG
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAACTAAATGAAACTCATGC
AATTATTATCAAATTGTATGTTTCACCACCAACATAGAAATCCTTCATTA
TTTTGTAAGGACCTTACAACTGTGCCAGGCTCAGAAACTGTTACATGGCT
ACTGGCTTATTTGGGGTATAACTACTTACCTATGACCTCACTTAAAGGTC
TGGGTGTCTGTCTGTCCTACACCAAAGGCAAGCAGAGTCATTAGTAGTAT
TCTCAAGGATGTTCTGATTAAACGTTACACTAAACTTAGTAACAAAGAAG
TCAGCCTTTAGTCCTATTTATTTATCACCCCCACCCCGCGCACAGGAGAT
CTCTGTGAGCTCTAGGCCAGCCTGCTCTACAGAGAGAATTCCAGAACAAC
CAGAGTTACATACACAGAAAAACTATGTCTTGGGGAAGAAATTAAAAATA
GAAAGCAGCAGCAGCGGGGGGTGGGTGGTGGGGGATATTTCCACCTCATC
TCCCCTCTCACCCTTTTAATTTCCCTTTATCCTTTTTTCCTCCTTTTTTT
CTAACCTCTCCTTATTTTTTTCCTCTTTTTTTACCTCCTTTTTCTATTTC
CATTCTCCCCGCCTTTTCCCACTTATCTTCTCCCCCTCTCTCCTTTTCTC
CTCTCCCCACTCTTCTTCTCCCCCCCTCTTCCTATCTCACTTTTTATATT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_c02.b1 MSMg01no280_c02.b1 CHROMAT_FILE:
MSMg01no280_c02.b1 PHD_FILE: MSMg01no280_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:54 2005
         (293 letters)



>mm_chr16_31551777_31552469
          Length = 693

 Score =  491 bits (254), Expect = e-143
 Identities = 281/290 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagacgcccagcttacttctgttttgacacaatcagtctccttcctttacccctgactc 60
           |||||||||||||| ||||||||||||||||||||||||||||||| |||  | ||||||
Sbjct: 490 tgagacgcccagctcacttctgttttgacacaatcagtctccttcccttaaacatgactc 431

                                                                       
Query: 61  tagttcctatagtgaatggagggctgtggcctctacttgacctctaacccctcacatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tagttcctatagtgaatggagggctgtggcctctacttgacctctaacccctcacatctg 371

                                                                       
Query: 121 caacccactccggttttctttgattttgtactggaagggagaccaggctggaactgtgag 180
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caatccactccggtttcctttgattttgtactggaagggagaccaggctggaactgtgag 311

                                                                       
Query: 181 cagccagctcttctttggcagcctctaaagccaggaccagtcatcagacagcaggccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cagccagctcttctttggcagcctctaaagccaggaccagtcatcagacagcaggccctg 251

                                                             
Query: 241 gggcttgagaggtgctcatgttacaagggtaaacaaaatgagcccattcg 290
           |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 250 gggcttgagaggtgctcatgttacaacggtaaacaaaacgagcccattcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_c02.g1 MSMg01no280_c02.g1 CHROMAT_FILE:
MSMg01no280_c02.g1 PHD_FILE: MSMg01no280_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:54 2005
         (234 letters)



>mm_chr16_32930464_32931097
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatagaaatccttcattattttgtaaggaccttacaactgtgccaggctcagaaactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 434 acatagaaatccttcattattttgtaaggaccttacaactgtgccaggctcagaaaccgt 375

                                                                       
Query: 61  tacatggctactggcttatttggggtataactacttacctatgacctcacttaaaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tacatggctactggcttatttggggtataactacttacctatgacctcacttaaaggtct 315

                                                                       
Query: 121 gggtgtctgtctgtcctacaccaaaggcaagcagagtcattagtagtattctcaaggatg 180
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 gggtgtctgtctgttctacaccaaaggcaagcagagtcattagtagtgttctcaaggatg 255

                                                                 
Query: 181 ttctgattaaacgttacactaaacttagtaacaaagaagtcagcctttagtcct 234
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttctgattaaacgttactctaaacttagtaacaaagaagtcagcctttagtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)