BAC Information

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BAC

Clone NameMSMg01-280G15
Chromosome16 (Build37)
Map Location 65,663,476 - 65,663,966
singlet/doubletsinglet
Overlap genenone
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
Downstream geneEG383186, Vgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G15.T7 (MSMg01no280_g15.b1)MSMg01-280G15.TJ (MSMg01no280_g15.g1)
ACCAG417514AG417515
length7601,010
length of high quality
(start - end)		715 (46 - 760)---
definitionCHROMAT_FILE: MSMg01no280_g15.b1 PHD_FILE: MSMg01no280_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:14 2005CHROMAT_FILE: MSMg01no280_g15.g1 PHD_FILE: MSMg01no280_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCATTGGTCAGATTCACTTGTGGGTATGTGTGTTGGGGGCTGTTCT
TGATTGTTAATTGATGGAAAAAAGACCCAGTGAACTGTAGACAGTATCAT
TTCTATTCAGGGGTTCATGGCTATATAAGAAATCTATGCAGTCATGAATC
AGTAAGCAAGCCTTCACCAGGGAGAAAAGAAGTTAGCTAGCAGCACACTC
CATAGCTCCTGCTGTACTTCCTCATCTGTGAGGGAGGCCCCTGGTCAGAG
GTGATGCTTCATAGAATAGCAAGCACCTGCCTTCAGCTTTCTTCCTGGAG
GTCCTGCTCTGAGTCAATGACCTATTGTAATCTGGAAGTGTAAGAGGAAA
TAAATTCCTTACTCCCTAAGTTGCTTTTGGACAGAGTAGTTTTTTATCAC
AGCAATAGAGAACAAACTATATCACATGTGCACTAGCTTATGGGATTAGT
GATAGCCAACCTATTGAGCATAATCATAATTCACAAATCCATATTATAAT
AATTAATAGTTCTTGCTTTAATCATAAACATGCCCTAGTTTGTAGAACAC
ATAGAAGACCTACGTTAACTATAACGTATAAATTATAGGGAGAACCAAGA
GTCAACTTTCAGTTAGTAAGGTCCAAAATGAAGAANAAGTATATATTGTG
CTACTGAAAATAACACAGGCAGGAGTATTTGGTGACTTCCAAGACTGACA
AGTTTATCAT

CTAACAATGCCTTTGAGTTGCCGTACGAAACTTGGCGCTAACATACTAAA
CATAAAGGAGCCCGGCGCTGTGCTGCATTTCACGTTCTTAGACCTTGAGT
TTTTTATTTGTCGGTCCGCGCGAGAAGCCTTTCGGGGCCCGATAGACGAT
GGCGAATAGAGCGGGCCCGAAGTAACGCGGATCCCCAGAACATTTGCGTG
ACAACACGTCAACGTGCACACTTCATTAGGACTAGAGGTCACCATTTACA
TTACGGTTCCTCCGTTAACTCCCACACCTTTCCGGTTCACTGTATGTTAG
AAACAGCGTCGGATCACGTCGCTAAACACGTTCATAAAATTATAGAGTAG
ACAATTCTCAGATTATCCGGAAGAGTCCACCAGAATTAAGTCTATCCGAA
TGAGAACTCGATGTTGTTACGCAGCTGACGGTATGAATTAAGACGCCATG
CCACGACGCCCGCCCTTTGCCACGTGCCGCCTAAGGTGGGAAATCCCCGC
AAAGCGTAGATGGTATTTATGTCCGAATACCAGGCGCTCGCTCCGATCAT
GGAGTGGTAACCCCTAACCACGCCGCCGGAATTCCCCGGCAAGTCGAGTT
GTATTGTGTTAGACGAGCCCCGCGTAACTTGTATTTTTTGCAAGAGTAAG
CGTCGCGCCCGCACCGTCGATTACCCGAATATTTACGCGCCATAATGACG
CATGGTTTCATAAGCAATTAAGCCCCCGCGCCTTTTAACCTACTTTTTTT
CACACTCCGACTTTGTGCGCCCCCCTGAATATTAGTAGTTGACACCTATC
ACCGCCCTCATAATTTCACCCGAGGTGCTGCACCCCAAGAGTTTACACCG
AACTAGTGAGCACATCGAACTCTACACTCCATATTTTGATTCTCGTGTCC
GCGTTGTTTAGGGTAGCAACTCTGCCAAAGATATTATGGTAAGAGGTGAC
CGTACACACAATACGACATTAACGCATATATGTAGTGCCGTCGTAATATA
TATTCTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g15.b1 MSMg01no280_g15.b1 CHROMAT_FILE:
MSMg01no280_g15.b1 PHD_FILE: MSMg01no280_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:14 2005
         (715 letters)



>mm_chr16_65662852_65663966
          Length = 1115

 Score =  928 bits (480), Expect = 0.0
 Identities = 488/491 (99%)
 Strand = Plus / Minus

                                                                        
Query: 225  cctcatctgtgagggaggcccctggtcagaggtgatgcttcatagaatagcaagcacctg 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 cctcatctgtgagggaggcccctggtcagaggtgatgcttcatagaatagcaagcacctg 1056

                                                                        
Query: 285  ccttcagctttcttcctggaggtcctgctctgagtcaatgacctattgtaatctggaagt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 ccttcagctttcttcctggaggtcctgctctgagtcaatgacctattgtaatctggaagt 996

                                                                        
Query: 345  gtaagaggaaataaattccttactccctaagttgcttttggacagagtagttttttatca 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  gtaagaggaaataaattccttactccctaagttgcttttggacagagtagttttttatca 936

                                                                        
Query: 405  cagcaatagagaacaaactatatcacatgtgcactagcttatgggattagtgatagccaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  cagcaatagagaacaaactatatcacatgtgcactagcttatgggattagtgatagccaa 876

                                                                        
Query: 465  cctattgagcataatcataattcacaaatccatattataataattaatagttcttgcttt 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  cctattgagcataatcataattcacaaatccatattataataattaatagttcttgcttt 816

                                                                        
Query: 525  aatcataaacatgccctagtttgtagaacacatagaagacctacgttaactataacgtat 584
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 815  aatcataaacatgccctagtttgtagaacacacagaagacctacgttaactataacgtat 756

                                                                        
Query: 585  aaattatagggagaaccaagagtcaactttcagttagtaaggtccaaaatgaagaanaag 644
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 755  aaattatagggagaaccaagagtcaactttcagttagtaaggtccaaaatgaagaaaaag 696

                                                                        
Query: 645  tatatattgtgctactgaaaataacacaggcaggagtatttggtgacttccaagactgac 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 695  tatatattgtgctactgaaaataacacaggcaggagtatttggtgacttccaagactgaa 636

                       
Query: 705  aagtttatcat 715
            |||||||||||
Sbjct: 635  aagtttatcat 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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