BAC Information

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BAC

Clone NameMSMg01-280L18
Chromosome16 (Build37)
Map Location 15,617,572 - 15,617,805
singlet/doubletsinglet
Overlap genenone
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682
Downstream geneMcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280L18.T7 (MSMg01no280_l18.b1)MSMg01-280L18.TJ (MSMg01no280_l18.g1)
ACCAG417752AG417753
length739737
length of high quality
(start - end)
239 (126 - 364)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no280_l18.b1 PHD_FILE: MSMg01no280_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:39 2005CHROMAT_FILE: MSMg01no280_l18.g1 PHD_FILE: MSMg01no280_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATCAAAATTCCAACTCAAGTCTTCATAGAGTTAGAAAGAACAA
TTCTCAAATTCATTTAGAATAACCCAGAACCCAGGATAGCAAAAACTATT
CTCAAAAATAAGAGAACTTCTGGGGGAATTACCATCCCTAACCACAAGCT
GTACTATAGAGCAATAGTCATAAAAACTGCATTGGTACAGAGATAGACAA
GTAGATCAATGGAAACACCTAAAGTCACTTGATATTTGACAAAGAAGCCA
AAACCATCCAGTGGGGGAAAAAAAAAAACAAACAGCATTTTCAACAAATG
ATATTGGTTCAACTGGTAGTCCCCCCGCCCCCCCAATGCAAATTTATCTA
TTCTTATCTCTTTGTACAAAGCTCAAGTCCAAAAGGATCAAGGACCTCCA
CATAAAACCAGACACACTGAATCTAATAGAAGAGAAAGTGGGGAAAACCC
TGTAACACATGGGCACAGGGGGAAAGTTCCTGAACAAAACATCAATGGTT
TAGGCTCTAAGATCACAAATTGACAAATGGAACCTCATAAAATTGCAAAG
CTTCTATAAGGCAAAGAGCATGGTCAATTGGACAAAACGGCAGACAACAG
ATTGGAAAAAGATCTCTACTAGTCCTATATCAAATAATGGGCTAATATCC
AATATATACAAAGAACTCAAGAAGTTAGACTCTGCCACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCACCATCCCCTAGGTTGGA
TCTCTGAATTCAAGATCTGTTTGCCCCTACTCCTGAGTGTTGGAATTAAA
AGTGTGCATCACCACATTTGTCTCATGCAGCATTGTTGGAGTCACTTGAA
TGTGTCCTTAGGAAGCAGAGACTTTTCTAGTCCAGGACTGAGTCATAAGT
ACCTGGATACAGCCCTGATCTTTTGATGGAATGGACCCTTTGGTATCTTT
TCGTTGTTGCTATTGTTATTCAATTGATAAAGTCATGTGCTTTTGTTCAT
CCTTTGAGATATTANNCTTACATCCCTTTGCANTTCCGTTAATAGATGAA
GTGTTATTACTTGTTTGTCTAATAGACAAAATTAACAAACAGTTTTAAGT
ATTTGTATTTTTGCAAGCATTATCTAATTTCATAGGAATATTCTAAATAG
GCATAACTCTCTAAACATAATTTTTATGCTTAAAGCAAACACTCACTACT
CAAAAAAGCAATGTTGAACAATAGGGAAGCATGTTTAATCACAGATTCTA
AATATCTATTTAGTAAAAGAATAAAAAATGTCTTCTTGTTGTTTTAAGTT
ATTTTTTGTTAACCATTACTAAAAACAAATCAAAACTTAAGAAAATATTG
TTGTAGAGAATTAAATTTTATAATTTTTTATTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_l18.g1 MSMg01no280_l18.g1 CHROMAT_FILE:
MSMg01no280_l18.g1 PHD_FILE: MSMg01no280_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:39 2005
         (236 letters)



>mm_chr16_15617372_15618007
          Length = 636

 Score =  414 bits (214), Expect = e-120
 Identities = 229/234 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcctgagtgttggaattaaaagtgtgcatcaccacatttgtctcatgcagcattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 434 tactcctgagtgttggaattaaaagtgtgcatcaccacatttggctcatgcagcattgtc 375

                                                                       
Query: 61  ggagtcacttgaatgtgtccttaggaagcagagacttttctagtccaggactgagtcata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 374 ggagtcacttgaatgtgtccttaggaagcaaagacttttctagtccaggactgagtcata 315

                                                                       
Query: 121 agtacctggatacagccctgatcttttgatggaatggaccctttggtatcttttcgttgt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtacctggatacagccctggtcttttgatggaatggaccctttggtatcttttcgttgt 255

                                                                 
Query: 181 tgctattgttattcaattgataaagtcatgtgcttttgttcatcctttgagata 234
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 254 tgctattgttattcaattaataaagtcatgtgcttttgttcatcctttgagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)