BAC Information

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BAC

Clone NameMSMg01-288G14
Chromosome16 (Build37)
Map Location 77,054,715 - 77,238,396
singlet/doubletdoublet
Overlap geneUsp25
Upstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik, LOC665120
Downstream gene2810055G20Rik, LOC435483, LOC100039561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G14.T7 (MSMg01no288_g14.b1)MSMg01-288G14.TJ (MSMg01no288_g14.g1)
ACCAG418246AG418247
length736736
length of high quality
(start - end)		321 (44 - 364)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no288_g14.b1 PHD_FILE: MSMg01no288_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:29 2005CHROMAT_FILE: MSMg01no288_g14.g1 PHD_FILE: MSMg01no288_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,054,715 - 77,055,027)(77,238,107 - 77,238,396)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATGCAGCCTGTCTCAGACCAGCCTGGGCTATGCGGTACAAACTTC
CACAAAACAAAAACAAACAAAGAACCAAGGAAAGAGGAGGGAGGTTGCAA
GTTGTGACAGATCCACAGATCCCGCCTGGTGTCCTATAGGCTCTGCTGGA
AAGTGCTTTCGGCCCTTCGTCCCAGGCTTCCCAGGGCTTCTATTTGCCCA
ACTCCTGGTTATTCTTTCATTCTGTTGTTGTTTTTGTTGTGTTTTGTTTT
ATTTTTGTCTTTATGTTTTTACTCAAGTGGTGAACCAGGTTTACCAAAAT
TTATCTACTTTTTTTTTTTCGCACCCCCCCACCTTGTGATGCTACTTTTA
TGCTCTATAAAGTAACCCCACTTATATCTCCTAAAAGTTAATACATTGTT
GCTGATCGTGTCAGTTTATATGCTGTATCAAATGTGACTCAGAAAGAAGT
ACACTTACACTGTATTCCCTGAAACTCTCATTCAAAATTATTTTTTAAAT
GAGAATATTATTTTAGAATATATAAAAAAGACTTTTCTCATGAAAAAAGA
CATCCTTGTGCTAATTGCAACAAATCTTTTTATAAGTAGTAGAATTGTCA
AGAATGATCCTTGAGAACATTGATATTCACAATTCCATTAATAGAATTTT
TCTCTTAGGTATCTTAAATTGTTCTTTTTCAGTCAT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCGTGACTATGATTTCATTTGCTCAA
CTCTGGTTATATAATGATCCCATAAATTCACTGGAGGTATTGAACTATAA
ATGGAGAGCAGGCATTTTCAGAGAAACATTAAAGCAGCTGTTACATATTA
TGCCTCCTGAGAAACAAATGTCCCTGTCATATTCTGAAATAATATGTAAG
CTGTTCCCTGCACTTCTTTTCAAGCTGGTTCTTGTATTCAGTATTTCTAG
TAAATGGATGCAAATCAGGTGCATTGTGCTGCGATGGGAAGGGAGAGATT
TGTTCAGAAATGTTCTCAGCCCCACCCCTCAATAAGATGACATGTTGGCT
GAGAGCAGTGAACCACACAATAAAACAAGAGAGAACTTTCCTCCATTTGA
CAGATGTACATAGAGCTTTTTCTTGGAGAAAGCACTGTATGTAAAATGGC
CACTACAACATAAAATCTAAAAACGTGAAAGGGACCTCCAAGATGCAGAT
TGCTTGGAAAAAAAATCACAACGTCCATGGCAGCATACCCCCCCCCATTC
CCTATTACATTGTACAGCAACTTGGAGAAAACACGTATTTCATTGAGAGG
GGGCATCTAATAAACAAAAGTTTGGGATTTTTTTTCTGAGAGTTTTTTTT
TTCTTTTTAAGAAGGAGAAGATAATATATGCAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g14.b1 MSMg01no288_g14.b1 CHROMAT_FILE:
MSMg01no288_g14.b1 PHD_FILE: MSMg01no288_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:29 2005
         (321 letters)



>mm_chr16_77054511_77055231
          Length = 721

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgcagcctgtctcagaccagcctgggctatgcggtacaaacttccacaaaa 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcaaatgcagcctgtctcagaccagcctgggctatgcagtacaaacttccacaaaa 264

                                                                       
Query: 65  caaaaacaaacaaagaaccaaggaaagaggagggaggttgcaagttgtgacagatccaca 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 caaaaacaaacaaagaaccaaggaaagaggagtgaggttgcaagttgtgacagatccaca 324

                                                                       
Query: 125 gatcccgcctggtgtcctataggctctgctggaaagtgctttcggcccttcgtcccaggc 184
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcccgtctggtgtcccataggctctgctggaaagtgctttcggcccttcgtcccaggc 384

                                                                       
Query: 185 ttcccagggcttctatttgcccaactcctggttattctttcattctgttgttgtttttgt 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 ttcccagggcttctatttgcccaactcctggtttttctttcattctgttgttgtttttgt 444

                                                                       
Query: 245 tgtgttttgttttatttttgtctttatgtttttactcaagtggtgaaccaggtttaccaa 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tgtgttttgttttatttttgtctttatgtttttacgcaagtggtgaaccaggtttaccaa 504

                        
Query: 305 aatttatctactt 317
           |||||||||||||
Sbjct: 505 aatttatctactt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_g14.g1 MSMg01no288_g14.g1 CHROMAT_FILE:
MSMg01no288_g14.g1 PHD_FILE: MSMg01no288_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:29 2005
         (290 letters)



>mm_chr16_77237907_77238596
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgtgactatgatttcatttgctcaactctggttatataatgatcccataaattcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttcgtgactatgatttcatttgctcaactctggttatataatgatcccataaattcact 431

                                                                       
Query: 61  ggaggtattgaactataaatggagagcaggcattttcagagaaacattaaagcagctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggaggtattgaactataaatggagagcaggcattttcagagaaacattaaagcagctgtt 371

                                                                       
Query: 121 acatattatgcctcctgagaaacaaatgtccctgtcatattctgaaataatatgtaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatattatgcctcctgagaaacaaatgtccctgtcatattctgaaataatatgtaagct 311

                                                                       
Query: 181 gttccctgcacttcttttcaagctggttcttgtattcagtatttctagtaaatggatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gttccctgcacttcttttcaagctggttcttgtattcagtatttctagtaaatggatgca 251

                                                             
Query: 241 aatcaggtgcattgtgctgcgatgggaagggagagatttgttcagaaatg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aatcaggtgcattgtgctgcgatgggaagggagagatttgttcagaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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