BAC Information

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BAC

Clone NameMSMg01-288J05
Chromosome16 (Build37)
Map Location 71,950,724 - 71,950,976
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288J05.T7 (MSMg01no288_j05.b1)MSMg01-288J05.TJ (MSMg01no288_j05.g1)
ACCAG418366AG418367
length920760
length of high quality
(start - end)
---253 (131 - 383)
definitionCHROMAT_FILE: MSMg01no288_j05.b1 PHD_FILE: MSMg01no288_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:41 2005CHROMAT_FILE: MSMg01no288_j05.g1 PHD_FILE: MSMg01no288_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTCTGTTTTTTGGGGGTTTAGTGGCTATTTTGTGGTGGTTTTTGTAG
GTTTCTCGTGGGCTTCCCCCCGTGTATTCACTCCCCCCCTTGATCTCTCC
CCCGAGATATGCGGCCGATTAAGAGGGGGGGGGGNGGGGGGTTTTCCCTA
AATAAAAANTTTTGGNCCGGGGGNCCCGGNNCCTTTAAATTAACGGNNAA
CNTTNCCAACCCTTAATTAAGTGTGCCCCGCCAGGGGNAATACCCCGGGC
GGGGNNAAAATTTNCCCCTTGGAAAATTCCNTTTTTTTCTTTCCCCCCCC
CACTTTTTTATTATTCCAATTGGGAAAAATGGGGGGGTTGGGTTTTGGGG
GAAAATTCCTTTTGGGGTCCCCAAAAAATGGGCCCTTTTTTTTTTTCCCT
GGGGCCAATTTCTTTTTTTTTTTGGCCCCCCCCTCCGGGGAAAATTANAG
GGTTGGGGGGGGGGGGGGGTTTTTTTTTTGGGGGGGGGNACCCCTTTTTT
TTTGGGGGAGAGAGCAATCTTGGGGGGGGGGGGTGTTTAATACACTTTCC
TGAAGGGGGGGGGGGGGGGGGATATACTTTTTATTCCACTTCTTTTCTTC
TTCTCTTTNGGTGGGGGNGGGGNNNGGGGCGGGGGCTAGGGCCCCCCTTC
GGTATCTCGATTTNCCCTGTTCNNNNNNNNTTTAAGATGGGCCGGGTGTG
GGAGTTGGGGGCCCTNNNNTAGGGGGCCCCAAATATTATATTTATAAAAA
AAAAAATACCATTTCTTCCTCCCCCCCGCGGTGTGGGGGGCGCCCCTCCT
GCGGCGGGGGGGGGGGGGGGGTGAATAACAATCCTTCAANNACACCCCTA
CCCAAATCATATTCATATGTGTTGGGGGTGGGGGTCTTTCAGGGGGAGTG
GGGGTGGGGGGTTGTATGAT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTATTGAACACCTAAAGGATCAGTG
TAATCTCCCGAATAGTAGCAGGTCATTACCTTTCCATTATAATATTTAAA
ACAGGCTTGGGTAGACTGTATATACTTATTTAAGTAATGGATCTGGAATC
AGGCAGAAAATTAATGGACAAGAGAAAACAGGAGCATTATTTCCTTGTAG
TATTTTCTACATTGGCAAGTAGACATGCTCTAAATGAGACAAATGACCAC
TGTTATGTGCTCAGGTATCAGAGAAGACAGGGAAATTTGCATCCTTTAGA
GTTACATCGTTGTCTTTCTTTATTATTCCATTTCATAAATATAGCTCACT
CATTGAAGAATTTTACTCTAAACTGCAAGAAAACTTAAACTTTTGACAAA
AGTGAACAATGAGGTAGAGATTTTAAATACTTGAGTAGATATTTAGTTTA
AAATAGGATCTATTTCTGAAGGTTTGACTAATACTATTAGGCCTATTCTG
GGCTGTTCTTGTGTGAATAATCAATTAACTGGCAAAAAATCCAATTTTTC
TTTATCCTAAGAAATGAATACAAGAAAAAAAAACTGGTCAGTCAAATTTA
GCACCAGCATTTAGCCTTTAACCACAAGTTGCCCATAATTTTTTATTTTT
AACACTATGACATCACACTAGAGTAACTGTATTGATATAGAGAAGAGACT
ATTTCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_j05.g1 MSMg01no288_j05.g1 CHROMAT_FILE:
MSMg01no288_j05.g1 PHD_FILE: MSMg01no288_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:41 2005
         (253 letters)



>mm_chr16_71950524_71951176
          Length = 653

 Score =  458 bits (237), Expect = e-133
 Identities = 249/253 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccattataatatttaaaacaggcttgggtagactgtatatacttatttaagtaatgg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctattataatatttaaaacaggcttgggtagactgtatatacttatttaagtaatgg 260

                                                                       
Query: 61  atctggaatcaggcagaaaattaatggacaagagaaaacaggagcattatttccttgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctggaatcaggcagaaaattaatggacaagagaaaacaggagcattatttccttgtag 320

                                                                       
Query: 121 tattttctacattggcaagtagacatgctctaaatgagacaaatgaccactgttatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttctacattggcaagtagacatgctctaaatgagacaaatgaccactgttatgtgc 380

                                                                       
Query: 181 tcaggtatcagagaagacagggaaatttgcatcctttagagttacatcgttgtctttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcaggtatcagagaagacagggaaatttgcatcctttagagttacatagttgtctttctt 440

                        
Query: 241 tattattccattt 253
           ||  |||||||||
Sbjct: 441 taagattccattt 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)