BAC Information

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BAC

Clone NameMSMg01-288K16
Chromosome16 (Build37)
Map Location 60,460,676 - 60,460,997
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneGabrr3, Mina, BC043118, LOC672884, Arl6, LOC100043804
Downstream geneEG668168, LOC668170, LOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288K16.T7 (MSMg01no288_k16.b1)MSMg01-288K16.TJ (MSMg01no288_k16.g1)
ACCAG418429AG418430
length718729
length of high quality
(start - end)		326 (50 - 375)282 (80 - 361)
definitionCHROMAT_FILE: MSMg01no288_k16.b1 PHD_FILE: MSMg01no288_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:48 2005CHROMAT_FILE: MSMg01no288_k16.g1 PHD_FILE: MSMg01no288_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTCCACTAAAAATTCACAAATATAATCTCTTATACTACTA
TGTTAATTACTGTATTTTTCAAAATTTACCAAAAGTTCAACTACCTTTTT
ATTCAACAAATTGAGATATAAACTTATTCTGCTTTTGGGATTTGACTGTA
ATATTTTATCCAAAGCCAGTATTCATAATTACTTAATTATCAAATATTAT
ATTTATTTTATATAAACATATATGAAAACAATCAAAGCCTATTATGTAGA
AATTGATATTGCATATAAGTTCCATTTGTGAGTCTCATACTGACTATATA
GACATATGCAATATATTTTGATATACCACCATCCATTTTTTGTAGGAGAT
TCTTTTAAAATAAGAGGCCCCACCTAGGGAGAGTATGAGAAGATAAATCT
CCAAAATAGGCGGTGATGAATTTGTAGGAGACGGAAGTTTATGCAAGAGT
GGATGGAGACCTGATTCAGCTTACTGTGAAATTTGCCTATTGGTATTCTA
GGTTGGGATGTTGAATTAATGAAGATTTTCTAGAACGCTGCTTACCATGA
ACAGATTCTCTTTTCTAGGTTTACTCCTTCTGTAACAGGTATCGGTTAGA
AAAGTGTTCAGTCATGCATGCCTCTCCTTCTCCTTCTTTCATATTAACTA
ATTCCTGTTTCTTTATTN

AAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCCCCTTAAAAAGAATT
CTGTTAAATTTATTCTAAGGAATAAGTGATATAATAAAGTATAGTTGACA
GTCTCAATTAACCTGGCCCCCTGAGACCTCTCATATACTGGACCGCCAAC
CAGGCAGCATATACCACCTAATATGAGGCCCCCAACACATATACCACAGA
GGACTGCCAGGTCTTGGTTTAGTCAGAGAAGATCCACCTAACCCTCAAGA
GACTGGAGGTCCCAGGGAGTTTAGAGGTCTGGTGGGGTAGGGGTGGGGGA
TATCTTCATGGTTTTTTTTTTCCCCCCCCCCCCCCCCGCAAGTTNTTTTT
TNTGTTTTTTTTTTTTTCCCCCCCCCCAAAAAAAAAAAAAAATTTGGGGG
GGGGGGCGTGTTTCCCCCTTGTTCTTCTCTCCCTCTTTCTTCCGATCTTC
TTCCTCTCTTTTTCCCTATTCCCCTATCTGGCCCCCGGGCCGCAGGACTC
GGATACATAGTTTTTGGACCTCTTTTTACCTCTCTTATTCTTTTTCCCAC
TTCTATTCTCTTTTTCCCCCTAATATCTCCCTCTTCCCGTTCCTTTCTTT
CCTCTCTATTATTCTCTCTCTTTGTCTCCTCTATAAATCTTTTTCTTCTT
TCTTACAAATTTTTATTATATCCCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_k16.b1 MSMg01no288_k16.b1 CHROMAT_FILE:
MSMg01no288_k16.b1 PHD_FILE: MSMg01no288_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:48 2005
         (326 letters)



>mm_chr16_60460472_60461197
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattccactaaaaattcacaaatataatctcttatactactatgttaattactgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccactaaaaattcacaaatataatctcttatactactatgttaattactgt 264

                                                                       
Query: 65  atttttcaaaatttaccaaaagttcaactacctttttattcaacaaattgagatataaac 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 atttttcaaaatttaccaaaagttcaactatctttttattcaacaaattgagatataaac 324

                                                                       
Query: 125 ttattctgcttttgggatttgactgtaatattttatccaaagccagtattcataattact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttattctgcttttgggatttgactgtaatattttatccaaagccagtattcataattact 384

                                                                       
Query: 185 taattatcaaatattatatttattttatataaacatatatgaaaacaatcaaagcctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattatcaaatattatatttattttatataaacatatatgaaaacaatcaaagcctatt 444

                                                                       
Query: 245 atgtagaaattgatattgcatataagttccatttgtgagtctcatactgactatatagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgtagaaattgatattgcatataagttccatttgtgagtctcatactgactatatagac 504

                                 
Query: 305 atatgcaatatattttgatata 326
           |||||||||| |||||||||||
Sbjct: 505 atatgcaatagattttgatata 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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