BAC Information

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BAC

Clone NameMSMg01-289H22
Chromosome16 (Build37)
Map Location 16,223,157 - 16,223,447
singlet/doubletsinglet
Overlap genePkp2
Upstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e
Downstream geneEG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289H22.T7 (MSMg01no289_h22.b1)MSMg01-289H22.TJ (MSMg01no289_h22.g1)
ACCAG419030AG419031
length717718
length of high quality
(start - end)
319 (47 - 365)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no289_h22.b1 PHD_FILE: MSMg01no289_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:49 2005CHROMAT_FILE: MSMg01no289_h22.g1 PHD_FILE: MSMg01no289_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTATTTTAATAGCTGAGTAAATGTACCACATTTTCTGTAACCA
TTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGAGATCTTCGA
TTTCTTTCTTCAGAGACTTGAAGTTTCTCTCATACAGATCTTTCACTTAC
TTAGTTAGATTTACACCAAGATATTTTATATTATTTGTAACTATTATGAA
AGGTGTTGTTTCCTTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAAA
GAAAGGGCACTGATTTGTTTCAGTTAATTTTACATCCAGAAACTTTGCTG
AACTTGTCTATCCAGTGGATGATTTCTCTCGCCGCCCCCTTTTGGGTCAC
TTAAGTATACTATCATATCATCCCCCCACAGAGATAATTTGACTTTTTCC
TTTCCGATTTGTAACTCTTTGACCTCCTTCGGTTGGCTAATTGTTCTGGC
TAGGACTTCGAGTACTATAATGAATAGGTAGGAAGAGAGTGGACAACCTT
GTCTAGTCCCTGATTTTTGTGGCATTACTTCAAGTTTCTCTCCATTTAGT
TTGATTCTGGCTACTGGTTTGCTGTATATTGCTTTTACTATGTTTAGGTA
TGGGCCTTGGATTCCTGGCTTTTCTAAGACATTTTTCATGAAGGGGTGTT
GGATTTTGTCAATGCTT
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCAATTTAGGAGAGGTCTTAGGGCA
TGGCTCCTCGGCTAGCTGTTTCCCCTTACTTCCTGGTCCATTCCACAGCG
CAGACAACCAGGAGAGGGTGTAAAGGTTATGCTGGCATAGGACTAGAGAT
TAGCAGTATAGACACAGGGCAACACAAAAGGCTTTGAGCCTTAAGGATCT
GGGGGAGGTAAAATGAAAAGCTTATATTCCTCCTATCTCCAAAGAAACAG
AAACTTCCTAGAGTCTGCATAGGCATATAAGTGTTAAATAGCTGATGAAT
AAGAAACCAGATGTTNNATTTACTGCCNTACTGGTCCCGAGACTGACACC
ATGTCCAAGACAGCTTATACCCACAAAAGAAAAAAAATAGAAGGCTTTCT
TACGGTGTCAGAGGGTGGGTCCATGGTCATCATGGCAAGAAGCATGCTGA
CAGGCAGGCAGGCATGCACTGTTGCAGCAGCTAAGGTTACATCGTACCCA
TATGATAGAAGCAGAGAGAAAGGAGAGACTGGCCCACCTCTAAGGATATA
CCTCCTCCAACAGGCCACACCTCCTAACCCTTTCCCCAAACACTACCAAC
AACTGGGGACTAAGTGTTCAATTATGAGCCCCTGGGGGGCACTCTCATTC
AACAACCACATTAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_h22.g1 MSMg01no289_h22.g1 CHROMAT_FILE:
MSMg01no289_h22.g1 PHD_FILE: MSMg01no289_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:49 2005
         (290 letters)



>mm_chr16_16222957_16223647
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaatttaggagaggtctt-agggcatggctcctcggctagctgtttccccttacttc 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttcaatttaggagaggtcttaagggcatggctcctcggctagctgtttccccttacttc 432

                                                                       
Query: 60  ctggtccattccacagcgcagacaaccaggagagggtgtaaaggttatgctggcatagga 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 431 ctggtccattccacagcgcagacaaccaggagagggtgtaaagcttatgctggcataggg 372

                                                                       
Query: 120 ctagagattagcagtatagacacagggcaacacaaaaggctttgagccttaaggatctgg 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctagaaattagcagtatagacacagggcaacacaaaaggctttgagccttaaggatctgg 312

                                                                       
Query: 180 gggaggtaaaatgaaaagcttatattcctcctatctccaaagaaacagaaacttcctaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggaggtaaaatgaaaagcttatattcctcctatctccaaagaaacagaaacttcctaga 252

                                                              
Query: 240 gtctgcataggcatataagtgttaaatagctgatgaataagaaaccagatg 290
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtctgcataggcaaataagtgttaaatagctgatgaataagaaaccagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)