BAC Information

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BAC

Clone NameMSMg01-289K13
Chromosome16 (Build37)
Map Location 32,496,024 - 32,697,395
singlet/doubletdoublet
Overlap geneZdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265
Upstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta
Downstream geneLOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289K13.T7 (MSMg01no289_k13.b1)MSMg01-289K13.TJ (MSMg01no289_k13.g1)
ACCAG419151AG419152
length756743
length of high quality
(start - end)
189 (129 - 317)240 (123 - 362)
definitionCHROMAT_FILE: MSMg01no289_k13.b1 PHD_FILE: MSMg01no289_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:01 2005CHROMAT_FILE: MSMg01no289_k13.g1 PHD_FILE: MSMg01no289_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,496,024 - 32,496,211)(32,697,157 - 32,697,395)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTTTTCGTTTGTTTTTTCAAATAGGGTTTCTCTGTGTAGTCTTG
GCTGTCCTGGATCTCTATCTGTAAGACAGGCTCAGAGAAGTCACATGACA
GAGATTCTGTGTCCCATGAAGACTTCATGTAAATCCCTTTGAGATTCAGT
GTTTCTGCTAACCTCTCTCAAGGTCTCTAGCACACCAAAGGGCTTCAGCA
CCTGAATTCTGGAAGACAAACAACTCCAAGAAAGCACATGGCAGGACTGG
GGCTCCTTGGACTCTGTTTTGAGTGGTGAGCAGGAAGAGGGTTGGTATGG
AAAATGATTCTTATTCAGCCCCACCCCCATTCCTCTGCCTCTGTGACATC
ACATTTTTTCCCCCCCCCCCCCTTCACTCCTGGACTGTGGCTTCTGTTGC
TATGGCAATGAAATTCTGGGTCATTAAGGGAAAGATCCGCTAGTATGAAG
TCTTATAATTTACCTGTGAGTATGGCAGTTGTGTTCCACTCCGTGTGTGT
AGTGTGTGTATTACGTGCTCTTTTTTTAAGAAAGAGTTTATATAATATCC
TCTGGTGTATGTTATCACCGTTCTTTTATACGTTCTTCTTTTTTACACTC
AATTTTTTTTTTTTCCCCCTCTTACTTCTTTCCTCTTTCCACCCTTCCTC
TTTCAATCCTCTTTTATTTTTTTTATCTCACTTTTTTCTTTCTCCCCCTC
TCTTTC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGCACAGGTAGTCATCAGAAAAGACAT
GCATTCTAATGGATTATAGCCGCTCCCCCTAGGGGACAAGTTGAGAAGTT
CAAGAGCTATTTTTATCACAATGCCGGGGTCACAAGGGCAGGGACCCCCC
ACAACACAGGACAGGGATGCCTGAGAAAAAATGTCCTGTAGTATATGGAA
CAAAGGAAGGTTTCTACATCTTTTAGACAACCTGAATTTTCCAGGAACTC
AACCACTGTGCAAAATTGAGGTAGTTGTCTGTTTTCTCTGGCACCTCACC
AAGAGCCGTTATTTTTTTGCAACCCCTCCCCGCACTGCCAGTGTGGTGCC
AGTCCCAGGTGGCCANCCCACACACGAAAATCGGACCTTCTAGCTGTTCT
TGACCCGGGTTTCTCACACTCTAAAGTGCACTCCACTCTCCAGGGTGTAT
GCATGTGGGTGTGCCTGTGGCCTAAGTGGTCTAATAGGGTTAGGGGCCTC
TCTATCCTTCTTCTCCTTACTCCCTTAAGACAGAGTCTCTCACTGAACCT
AGATCTGGACCCAGTCACCCAATCCCACAGCACTGGGGTTAGAGGCATAT
GTGTGAACATGCCCATCTTTTTTATGAGGTGCTGGACCCACCTTCTCACT
AGCACAGTATGCACCTTTACCTACTAAGGTTCCTTACCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_k13.b1 MSMg01no289_k13.b1 CHROMAT_FILE:
MSMg01no289_k13.b1 PHD_FILE: MSMg01no289_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:01 2005
         (189 letters)



>mm_chr16_32495824_32496412
          Length = 589

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctcagagaagtcacatgacagagattctgtgtcccatgaagacttcatgtaaatccct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ggctcagagaagtcacatgacagagattctgtgtcccacgaagacttcatgtaaatccct 260

                                                                       
Query: 61  ttgagattcagtgtttctgctaacctctctcaaggtctctagcacaccaaagggcttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagattcagtgtttctgctaacctctctcaaggtctctagcacaccaaagggcttcag 320

                                                                       
Query: 121 cacctgaattctggaagacaaacaactccaagaaagcacatggcaggactggggctcctt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cacctgaattctggaagacaaacaactccaaggaagcacatggcaggactggggctcctt 380

                   
Query: 181 ggactctg 188
           ||||||||
Sbjct: 381 ggactctg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_k13.g1 MSMg01no289_k13.g1 CHROMAT_FILE:
MSMg01no289_k13.g1 PHD_FILE: MSMg01no289_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:01 2005
         (240 letters)



>mm_chr16_32697037_32697676
          Length = 640

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccctaggggacaagttgagaagttcaagagctatttttatcacaatgccggggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctccccctaggggacaagttgagaagttcaagagctatttttatcacaatgccggggtca 300

                                                                       
Query: 61  caagggcagggaccccccacaacacaggacagggatgcctgagaaaaaatgtcctgtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caagggcagggaccccccacaacacaggacagggatgcctgagaaaaaatgtcctgtagt 240

                                                                       
Query: 121 atatggaacaaaggaaggtttctacatcttttagacaacctgaattttccaggaactcaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atatggaacaaaggaaggtttgtacatcttttagacaacctgaattttccaggaactcaa 180

                                                                      
Query: 181 ccactgtgcaaaattgaggtagttgtctgttttctctggcacctcaccaagagccgtta 239
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccactgtgcaaaattgagggagttgtctgttttctctggcacctcaccaagagccgtta 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)