BAC Information

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BAC

Clone NameMSMg01-290C22
Chromosome16 (Build37)
Map Location 66,981,150 - 66,981,367
singlet/doubletsinglet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290C22.T7 (MSMg01no290_c22.b1)MSMg01-290C22.TJ (MSMg01no290_c22.g1)
ACCAG419532AG419533
length846752
length of high quality
(start - end)
127 (46 - 172)368 (383 - 750)
definitionCHROMAT_FILE: MSMg01no290_c22.b1 PHD_FILE: MSMg01no290_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:39 2005CHROMAT_FILE: MSMg01no290_c22.g1 PHD_FILE: MSMg01no290_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGTGATTCACATATTCAAGAATAGATATGACCTTAACCCTTG
TGTATCTTCTTGGGAAAATGTGTGCCGATTTTTTTGTTTGTTTGTTTGTT
TGTTTTGGTGGAATTTTATTTTCGTTTTCCGCAANATCCACCCCCACCTT
ACAAAAACACCCAAATTTTCATTTTTTTACAAAACACTCATTCCCAACTT
AACATTTTAACAAAACCAATACAAAATTACCAAAAAATAAATGTAAATTG
TTCATACACAACAAGCTAAACCCCCCTTTTTTTCCACCCACCCCATTCAC
CACAAACCCCCGAATTTTTAATAGTTCTCCCCCCCCCCCCACAAGTGGAA
TATTTTATTTTTGATTTTGTGTCTCCCCCCCCAAAAAAAAAAAAAAAAAA
CTCCGGGGGGCGGCGGCCCCTCCTTGACCCCTATTTACGCTAATATTCCC
CTACCCCCTATCCCATTATTTCCCCCCCCCCCCGACCCACCATCCTCAAC
CACAATCCCACCATATCCTTCCCCTGATCCCTCCCTTCTCTCCACGTAAA
CCACCTCCCATACATATTCTTATCCCCTCCTACACCTCCCCAACACCTCC
GCACTTCCCATCCCGCGAATTACCACCCCTAACTTCCCTATACCCCCAAC
CATAATCCCATCCACCCCAATTATATAATCCTAACTCATATCCACCCTAC
CCCCCACTTATCCTTTATATTTCCCAACCCTCCATCCCCAAACCACACAT
AAAATAACACCACACCACCCTAAATACCCCAAAAACACACACCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATATGTGAAGGTCAGAAGCTGAGGTTAG
TCTGTAAAATCACCAATTTTTTCCTGTCTTGTTATCACTTTAATTCATTC
TTGCTGATGAGTGTTGTGCTAATAAGTGGTAGACAGATACGTAGTTGGTT
AAAAGAAAAATATGTTGATTTTTTTAAAGAACCAATCATTTTTAAGGTAT
AAGGGTTCACAAAACAATTCCAAAATTGTAGAAACCAACTGAAAACTGCT
CATACTTGTAGTGTATATTTCTCCAAAAATGAGTGACTTGATTGAAATGT
GTCTTTGTAGTTCAGATCTAGTTCAGCGCCAGAGAGTTGTGGAAAGTTCT
CTCTTATTTTGCATTCACAAGAATGTCCAATGACCTTCATTCCATAAAAG
TGAATTATAATGGGGTCAATGTTGTATCAAGACTACATGCTACACATTTC
TTTATAGAATTGAGAAAACCAGTAAGAGGATGTGCTAACTATTCAATGTT
GTTTGCTCTTCTTGAAATTCTCTATTGTGATTCTCCACCAAAATGCTTTG
GTTACAGGTGGAGCACACGCTACCACATTCAATTTGTATCTCCCAGGAAG
GCAAGTCACTAAAGTTCACCTGCAAGCCACGGGCCTTCTGGTTCTATCTT
TCACTAATCTATCAATCTGAAACCCAACAAAGCTCTGTTATCACCTCTCC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_c22.g1 MSMg01no290_c22.g1 CHROMAT_FILE:
MSMg01no290_c22.g1 PHD_FILE: MSMg01no290_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:39 2005
         (368 letters)



>mm_chr16_66980800_66981567
          Length = 768

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Plus

                                                                       
Query: 151 tgctaactattcaatgttgtttgctcttcttgaaattctctattgtgattctccaccaaa 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgctaactattcaatgttgtttgctcttcttgaaattctctattgtgattctccaccaaa 410

                                                                       
Query: 211 atgctttggttacaggtggagcacacgctaccacattcaatttgtatctcccaggaaggc 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atgctttggttacaggtggagcacacgctaccacattcaatttgtatctcccaggaaggc 470

                                                                       
Query: 271 aagtcactaaagttcacctgcaagccacgggccttctggttctatctttcactaatctat 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagtcactaaagttcacctgcaagccacgggccttctggttctatctttcactaatctat 530

                                                 
Query: 331 caatctgaaacccaacaaagctctgttatcacctctcc 368
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caatctgaaacccaacaaagctctgttatcacctctcc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)