Query= MSMg01no290_h14.b1 MSMg01no290_h14.b1 CHROMAT_FILE:
MSMg01no290_h14.b1 PHD_FILE: MSMg01no290_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:02 2005
(675 letters)
>mm_chr16_79209768_79210849
Length = 1082
Score = 1234 bits (638), Expect = 0.0
Identities = 665/678 (98%), Gaps = 7/678 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcaaatttgctgaccctcctatggaaacaagaagctcctttgtcttgaagaca 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 882 gaattcagcaaatttgctgaccctcctatggaaacaaaaagctcctttgtcttgaagaca 823
Query: 65 tgaagttgtgaagtcttgttcttgttttattattttcaacgtagcttcccagtgaaactt 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tgaagttgtgaagttttgttcttgttttattattttcaacgtagcttcccagtgaaactt 763
Query: 125 tgggtaggtttatgcttaccttgccaatctttttgctgagctacacttccattgcttcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 762 tgggtaggtttatgcttaccttgccaatctttttgctgagctacacttccattgctttgg 703
Query: 185 ggtcctaatattttccactgcatcatcacattaatccaatccacatcttgctgactgaag 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggtcctaatactttccactgcatcatcacattaatccaatccacatcttgctgactgaag 643
Query: 245 atcacaaaattagccaatttctctgtcgccatggaccatatagaacaaatatattaagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atcacaaaattagccaatttctctgtcgccatggaccatatagaacaaatatattaagtc 583
Query: 305 tatgtgatgatata-------tctatttttgaacacctgatcctcgtctaattcaatgtc 357
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 tatgtgatgatatattggatctctatttttgaagacctgatcctcgtctaattcaatgtc 523
Query: 358 cattaatttaggttttaaatatttgtcttgaaattgttctgattaattttctaatgttta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cattaatttaggttttaaatatttgtcttgaaattgttctgattaattttctaatgttta 463
Query: 418 taagtgttagttaagtaatggtactgtcagatatcagtacaaatcctcagtatggactca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taagtgttagttaagtaatggtactgtcagatatcagtacaaatcctcagtatggactca 403
Query: 478 ctatttaatctcttataactaaatcattaagtgtattcaaatacaataatctagaaagcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctatttaatctcttataactaaatcattaagtgtattcaaatacaataatctagaaagcc 343
Query: 538 atagaactctccaatatctcaatagtagatgtagcttggagggagacaatttgacatata 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atagaactctccaatatctcaatagtagatgtagcttggagggagacaatttgacatata 283
Query: 598 tattcactagttaatttggcaaagacaaataattgatatctctaatatctgcttgaatta 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 282 tattcactagttaatttggcaaagacaaataactgatatctctaatatctgcttgaatta 223
Query: 658 tggcaagtattctgaagt 675
||||||||||||||||||
Sbjct: 222 tggcaagtattctgaagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1082
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1072
Effective search space: 712880
Effective search space used: 712880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_h14.g1 MSMg01no290_h14.g1 CHROMAT_FILE:
MSMg01no290_h14.g1 PHD_FILE: MSMg01no290_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:03 2005
(287 letters)
>mm_chr16_79174925_79175611
Length = 687
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 1 tttgacttgacacccaattttgtatgtgtctggccatagtcatgtttttcttggaagagc 60
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 tttgacttgaca-ccaattttgtatgtgtctggccatagtcatttttttgttggaagagc 259
Query: 61 aatgaagaccgtc-ttaagagttttcctgttgagggcatggacaggcccactgtgttgaa 119
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 aatgaagacagtctttaagagttttcccgttgagggcatggacaggcccactgtgttgaa 319
Query: 120 ttattttgcagcacgtacttgacacaaatcaattgctgctgttttttcatttggacattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttattttgcagcacgtacttgacacaaatcaattgctgctgttttttcatttggacattt 379
Query: 180 aggtcaagagacatgtcagttctttcaaggtcattccctagattctgggatttaaatcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggtcaagagacatgtcagttctttcaaggtcattccctagattctgggatttaaatcaa 439
Query: 240 gaggaggaaaagatttcatgaaggaagggaaaaaatacccctaagggg 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaggaggaaaagatttcatgaaggaagggaaaaaatacccctaagggg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
