CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGCGCTATCCAATGGGTTTGATGCAGAAATTCTCTTTGTACTTA
GAAGCATGAAGTGAATGAAATCCAAAGAAATAAGAGGAAGCTGGAATCTA
TATATCTGGGAGGCTACAAACAACCCATAGCATGGAAACATTTGATGCAA
TAATAGAAGGAGATTAAAGAGTCTGAAATGGCTTAGTGTGCTATTCAGAG
GTCTACTTCATATAGGTACAACCTTCGAAGCTTAGTTTTCTCATCACAAA
AAACCCACAAAGCATTCACACACACACACTCACACACACACACACACACA
CACACACACACACACACACACGCACACTTGTGTGTGTGCCTTAGTGCCTT
TGGAAAAGTTATTTCTGCCCATGTTCCCACTGACTTTTTTTCTATACCCT
AGGATAAAAAAATGTGTAAAGTATACTCACACTTTATTTACTTATTTTCT
TATTTATTTTTAATATTATAGTTGTTTCGTTCTGAAATTCATAAAACTGA
GTCCTAGATCTTAGTTTCAGGTCCCACCATAGACACAGGCCCTATCTTCA
TCTGGCATGGTGATGACCAAAACCTGTTTGTCAATTGCTAGAGAAAGCCG
AGGGGGAACTTGTTTACAAAGAGATCGACGAAGTCACCCAGCTCCTCGGG
GAAGCTAGTCTAGAAAATGGTTGATGGTAAAACCGTCTCN

CTGGCGGCCGCCTGGTTTCGAAGTCGCANGAACNANAGAAGGTTACCGGA
CGCAAGAGNCGGNNCAAGGANAGAAGNCNCAGGNGGNCNNCAATTTTTTT
CCCAAAAAAAAGAGAGAGGCNCNAANNGCAGNGACGGGGNGAACTCNCNA
AACAGNGAAGGCAAGCAAGCAAGGAGCAAGCAACCCCCNCCACCGAGNCN
CNAANANGCGNNGCCACCAGGAGGGGCAGCCCATTTTTAGCCGGGTCTTT
CAATCTCAAATGATGCGGATTTAGGATGAGTTTTCAAGGGCACCAGTCTT
TTTTTTTTTTTCACAGGNAGGGGNACCCGGCNGCCGGGGACTTATTTTCC
CCCCCCCGCACTCAAGTAGACATCCTAGAATCATCCCCACACTACCCCAC
TGGAATTTAAAAAAAATTTCAATGTCATCAGCTGTATTATTATCCCATTT
CTTAGAGATGACCAACATTTGCTTATCTGGATCAATTTTCTAATAGAGAG
CTTTTTATATTCTTCATTATCCTATTAAAATTTACTCTGCATGTCATTGA
AGAGACACACCCTATGTTCTATAATTAATCTTCTTTTTCTGTGGCGAACA
AAGTGCCTTAACAGTGTAACATGCCCAAAATAATTCTCGAAATTTTTTTT
TTTTTAGAATGACCTTTACAGCATAGAATCTTCTTGCCCAATAATTGGCC
CTGTGTAATAACAAAATATATGGGA

Query= MSMg01no291_f03.b1 MSMg01no291_f03.b1 CHROMAT_FILE:
MSMg01no291_f03.b1 PHD_FILE: MSMg01no291_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:05 2005
         (674 letters)



>mm_chr16_51116829_51117901
          Length = 1073

 Score = 1106 bits (572), Expect = 0.0
 Identities = 644/676 (95%), Gaps = 18/676 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgcgct---atccaatgggtttgatgcagaaattctctttgtacttagaag 60
           |||||||||||||||   |  |||||| ||||||||||||||||||| ||||||||||||
Sbjct: 960 ggaattcactgcgctaaaa--caatggatttgatgcagaaattctctctgtacttagaag 903

                                                                       
Query: 61  catgaagtgaatgaaatccaaagaaataagaggaagctggaatctatatatctgggaggc 120
           ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 902 catgacgtgaatgaaatcaaaagaaataagaggaagttggaatctatatatctgggaggc 843

                                                                       
Query: 121 tacaaacaacccatagcatggaaacatttgatgcaataatagaaggagattaaagagtct 180
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 842 tacaaataacccatagcatggaaacatttgatggaataatagaaggagattaaagagtcg 783

                                                                       
Query: 181 gaaatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaaatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagctta 723

                                                                       
Query: 241 gttttctcatcacaaaaaacccacaaagcattcacacacacacactcacacacacacaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 722 gttttctcatcacaaaaaacccacaaagcattcacacacacacactcacacacacacaga 663

                                                                       
Query: 301 cacacacacacacacacacacacaca--cgcacacttgtgtgtgtgccttagtgcctttg 358
           |||| |         ||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 662 caca-a---------acacacacacgtgcgcacacttgtgtgtgtgccttagtgcctttg 613

                                                                       
Query: 359 gaaaagttatttctgcccatgttcccactgactttttttctataccctaggataaaaaaa 418
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 612 gaaaagttatttctgtccatgttcccactgactttttttctataccctaggataaaaaa- 554

                                                                       
Query: 419 tgtgtaaagtatactcacactttatttacttattttcttatttatttttaatattatagt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtgtaaagtatactcacactttatttacttattttcttatttatttttaatattatagt 494

                                                                       
Query: 479 tgtttcgttctgaaattcataaaactgagtcctagatcttagtttcaggtcccaccatag 538
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtttcgttctgaaattcatgaaactgagtcctagatcttagtttcaggtcccaccatag 434

                                                                       
Query: 539 acacaggccctatcttcatctggcatggtgatgaccaaaacctgtttgtcaattgctaga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acacaggccctatcttcatctggcatggtgatgaccaaaacctgtttgtcaattgctaga 374

                                                                       
Query: 599 gaaagccgagggggaacttgtttacaaagagatcgacgaagtcacccagctcctcgggga 658
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaaagccgagggggaacttatttacaaagagatcgacgaagtcacccagctcctcgggga 314

                           
Query: 659 agctagtctagaaaat 674
           ||| ||||||||||||
Sbjct: 313 agcaagtctagaaaat 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space:   705832
Effective search space used:   705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)