BAC Information

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BAC

Clone NameMSMg01-291F24
Chromosome16 (Build37)
Map Location 53,614,049 - 53,614,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291F24.T7 (MSMg01no291_f24.b1)MSMg01-291F24.TJ (MSMg01no291_f24.g1)
ACCAG420389AG420390
length731744
length of high quality
(start - end)
185 (128 - 312)271 (443 - 713)
definitionCHROMAT_FILE: MSMg01no291_f24.b1 PHD_FILE: MSMg01no291_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:09 2005CHROMAT_FILE: MSMg01no291_f24.g1 PHD_FILE: MSMg01no291_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTGGGCGGAANNCANNGNN
TTTTATCAACACAAGGAAAACATTGGGGAATTGGACAACTTTTTCTGAAT
CCATTCCTTTTTTGCGAAAAAACTGGGTTACTTCAACCTTCTTATTATTA
AGGCTTCTATGAACATAGTGGAGCATGTGTCCTTATTACATGTTGGAGCA
TCTTCTAGCTGTATGTTCAGGAGTGGTATATCTGTTTCCTCCAGTATATC
TAAGTCCAATTTTCTAAGGGAACTGCCAACTGATCTGCAGAGTTATTGTT
CCACCTTGCATTCTTTTTTTAANGGAGGAGNGCTCTTCTGTACATCCTCG
TTTTTTTTTGCTCCCCCCCCCCCCTTAGNCATTCTGACTGGTGTGAGGTT
GAATCTCACGGTCCTGAAAAAAAAACACACTGATGACTGAGGATGTTGAA
CACTTGTTTTTAGGTGCTTCCATTTGGTATTTCTCAATTAAGAATTCTTT
ATTTAGCTCTGTACCCCAATTTTATAGGTTTCTCCCCCCCTCCTCTGGAG
TATAACTTCTTAAGCTCTTCATATATACTTGACATTAGTCCTCTATCAGA
TGTGGAGTTTGTAAAGGTCTTTTCCTAATCTGTTGGCTGCCATTCTGTCT
TATTGTTTTTGTCCTTTGCCCTACAGAAGCTTTGCATTTTTATAACGGCC
CTTTGCCAATTCTTGATCTTAGAACTTTAGG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGTATCTTTTCTGTCTCAGGTTG
CTGAGATTGTATACATGAACTATAATCCCTAACTCTATTCTACCTTTTAC
CTTCCTGTTTAAAATGTATTAAGAGTTGAACTAACACAAGTCATAAGGAA
TAGTCCTGTAAGTGGTGTTTTTCTGTTTGTTTTGCTTTGGTAAAAGTGCT
CATATTTGAACAGTGATACAGTAAAGGTCACACTACCTTTAAAATAAAAT
GATGACCAAGCATATATAAATTTTATTAATTAACAAATCAATTTTAGAAT
AACCAGGCTAAAGTGATAAATAATTATCCCCCCCCCTCTGAAATTCAACT
TTAGCAGAAATTTCAGACTGCATTGGATAATATAAAAAAAAACATCAAGG
TGCCGGAATGAGAGCCTCAGCAGTGTAGTGAGGAGCAGGATTCAGTGAAG
GGTGAGTAAGATGCCTAAATTCATCAAGTTTGCCTTGGGATAGTCTACTG
TTGAAATCCTACAACATAGACATTTTTTAGGTCTGACATTGGCTTATGAT
TATATTTCTAAATGGACATAATACCAATTACCTATTTAGCCTCAATTTTA
TCTCCAATATTTAATATGTTCATAATACTACTTGTGTTCTGAAACAACTC
ATTCCTACCAAGATAAATCAGGAGAGACTTTCTTTACATTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_f24.g1 MSMg01no291_f24.g1 CHROMAT_FILE:
MSMg01no291_f24.g1 PHD_FILE: MSMg01no291_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:09 2005
         (271 letters)



>mm_chr16_53613849_53614519
          Length = 671

 Score =  503 bits (260), Expect = e-147
 Identities = 269/272 (98%), Gaps = 2/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaaggtgccggaatgagagcctcagcagtgtagtgaggagcaggattcagtgaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaggtgccggaatgagagcctcagcagtgtagtgaggagcaggattcagtgaaggg 260

                                                                       
Query: 61  tgagtaagatgcctaaattcatcaagtttgccttgggatagtctactgttgaaatcctac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtaagatgcctaaatttatcaagtttgccttgggatagtctactgttgaaatcctac 320

                                                                       
Query: 121 aacatagacattttttaggtctgacattggcttatgattatatttctaaatggacataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatagacattttttaggtctgacattggcttatgattatatttctaaatggacataat 380

                                                                       
Query: 181 accaattacctatttagcctcaattttatctccaat-atttaatatgttcataatactac 239
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 381 accaattacctatttagcctcaattttatctccaattatt-aatatgttcataatactac 439

                                           
Query: 240 ttgtgttctgaaacaactcattcctaccaaga 271
           ||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtgttctgaaacaactcattcctaccaaga 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)