BAC Information

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BAC

Clone NameMSMg01-291G12
Chromosome16 (Build37)
Map Location 42,927,112 - 42,927,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G12.T7 (MSMg01no291_g12.b1)MSMg01-291G12.TJ (MSMg01no291_g12.g1)
ACCAG420412AG420413
length743733
length of high quality
(start - end)
315 (42 - 356)452 (122 - 573)
definitionCHROMAT_FILE: MSMg01no291_g12.b1 PHD_FILE: MSMg01no291_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:11 2005CHROMAT_FILE: MSMg01no291_g12.g1 PHD_FILE: MSMg01no291_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTTGTCAGCACCCAGGCTGTCTCGGCTGTTTTACTAATGTTATAAAAC
ATGGTGAGAAGGACAATTTACAGAAGGAGAGGTTTATTTGACTACAATAC
TAGACAGCTAGGATTACATCACAGTGAGAAAGTGTGGCAGCGAGCAGCCA
GCATGGCAGCTGAAGCTGAGGCCTCGCCTCTTCTTGTATTACAGGCAAGT
ATCAGAAAAGAACTTTAGTCAAGTGGCTCAAGCATTTAAACTCTCCCCCA
CACCCTGTATCATACTTTCTCCAGTAAGGACACCATGATGGTTTGTATAT
GCTTTTTCTATGTGGGCGCCCCCCCTTAGAAGTTGTGGCCCTGTTGGAGT
AGGTGTACCCCCACTGGAGTAAAAGTGTCGCTGTGAGTGTGGACTTTAAC
ACCCTCGTTCTAGCTGCCTGGAAGTCAGTATTCTGCTAACAGCCTTCAGA
TAAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCTGTTTAGATGCT
GCCATGCTCCTGCCTTTATGATACTGGACTGAACCTATGAACCCGTAAGC
CAGTCCCAATTAAATGTTGTCCTTTATAAGAGTTGCCTTGGTCATGGTGT
CTGTTCACAGCAGCAAAACCCTAACTAAGACAGACACACATCTTAAACCA
CCTAAATATCACTATGTATTGGGAAACAAGTTTTCTAGTGCTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTATGTGTTCAATACTTAACCATCATGA
ATTCATAAGCATATTCAAACCTTATTAGTAAAGTTTCCAGACAATCACTT
CTATTTCTATGATTGATCATCGATAAACTGATGCGCTATAATTTGCAAAT
GTGGGATCCACGTCAGTGGCAGTGAAGTCAATCTGCACGTTCCTGCCCCT
AGGAATTCAGGTGCTGAACCGATAGACGACAACACTGGAGAGGGAGCTTT
AGGACATAATTATGATTAGCTGAGATCATGGTGTCAGTGTCATCAAGAGT
GGGAACTGTGCCTTACAAAAGAAATCCCAAAGAGCTAGTTTGTTCACTTC
TGGCATGAGACCACACAAGAGAATTCAGCAGTCTCCAAAATGGAAGAGGG
CCCTCTTTGGAACCTGCCAACGCTAGCTACAGCCTTAGATTTTCAGCCTC
CAAAACTGTAACAAATAAATTTTTGTTGCTTGTAAGTGACTCATAGATGG
TCATCTGTTTCTATGGACAGNNNNNNNTNNNTNNNNNTNTTTTTTTTTTT
TTNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTCCTTTTTTTT
TTTTTTTTTTTCTNTTTTTTTCTTTTCTTCCCTTCTCTCCCCTTTTTCTT
CTTTTCCCTTCTTTTTTTTTCTCCTCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g12.g1 MSMg01no291_g12.g1 CHROMAT_FILE:
MSMg01no291_g12.g1 PHD_FILE: MSMg01no291_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:11 2005
         (452 letters)



>mm_chr16_42927112_42927963
          Length = 852

 Score =  690 bits (357), Expect = 0.0
 Identities = 363/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattagtaaagtttccagacaatcacttctatttctatgattgatcatcgataaactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttattagtaaagtttccagacaatcacttctatttctatgattgatcatcgataaactga 306

                                                                       
Query: 61  tgcgctataatttgcaaatgtgggatccacgtcagtggcagtgaagtcaatctgcacgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgcgctataatttgcaaatgtgggatccacgtcagtggcagtgaagtcaatctgcacgtt 246

                                                                       
Query: 121 cctgcccctaggaattcaggtgctgaaccgatagacgacaacactggagagggagcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctgcccctaggaattcaggtgctgaaccgatagacgacaacactggagagggagcttta 186

                                                                       
Query: 181 ggacataattatgattagctgagatcatggtgtcagtgtcatcaagagtgggaactgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggacataattatgattagctgagatcatggtgtcagtgtcatcaagagtgggaactgtgc 126

                                                                       
Query: 241 cttacaaaagaaatcccaaagagctagtttgttcacttctggcatgagaccacacaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 125 cttacaaaagaaatcccaaagagctagtttgttcacttctggcatgagagcagacaagag 66

                                                                       
Query: 301 aattcagcagtctccaaaatggaagagggccctctttggaacctgccaacgctagctaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aattcagcagtctccaaaatggaagagggccctctttggaacctgccaacgctagctaca 6

                
Query: 361 gcctt 365
           |||||
Sbjct: 5   gcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)